| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,647,421 – 12,647,517 |
| Length | 96 |
| Max. P | 0.630078 |
| Location | 12,647,421 – 12,647,517 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.89 |
| Shannon entropy | 0.49707 |
| G+C content | 0.40972 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -8.85 |
| Energy contribution | -8.60 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12647421 96 + 27905053 -------------CAACAUUACGAUCGUUAUGCACGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGCCCAUAAAAAGACGUUUAACGAGGCCCAGAAC--- -------------.....(((((((..(((((((.(((....).)).))))))).)))))))..............((((.((((......))))..).))).......--- ( -18.30, z-score = -1.94, R) >droSim1.chr3R 18689307 96 - 27517382 -------------CAACAUUACGAUCGUUAUGCACGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGACCAUAAAAAGUCGUUUAACGAGGCCCAGAAC--- -------------.....(((((((..(((((((.(((....).)).))))))).)))))))..........(((((((........)))))))...............--- ( -22.90, z-score = -3.51, R) >droSec1.super_12 616845 96 - 2123299 -------------CAACAUUACGAUCGUUAUGCACGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGACCAUAAAAAGUCGUUUAACGAGGCCCAGAAC--- -------------.....(((((((..(((((((.(((....).)).))))))).)))))))..........(((((((........)))))))...............--- ( -22.90, z-score = -3.51, R) >droYak2.chr3R 17087533 96 - 28832112 -------------CAACAUUAUGAUCGUUAUGCACGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGCCUAUAAAAAGUCGUUUAACGAGGCCCAGAAC--- -------------.....((((((((.(((((((.(((....).)).)))))))...........))))))))...((((.((((......))))...)))).......--- ( -20.80, z-score = -2.36, R) >droEre2.scaffold_4770 8759068 96 - 17746568 -------------CAACAUUAUGAUCGUUAUGCACGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGCCUAUAAAAAGACGUUUAACGAGGCCCAGAAC--- -------------.....((((((((.(((((((.(((....).)).)))))))...........))))))))...((((.((((......))))...)))).......--- ( -20.80, z-score = -2.66, R) >droAna3.scaffold_13340 7257506 87 + 23697760 ---------------------CGAUCGUUAUGCAAGGCGCAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGCCCAUAAAAAGCCAUUUAACGAGGCCCAAAC---- ---------------------.((((.(((((((.(((....).)).)))))))...........))))..................(((.........)))......---- ( -18.40, z-score = -2.23, R) >dp4.chr2 17634749 109 + 30794189 AUCCCACCAACAAAAUCUUGAUGAUCGUUAUGCACGGCGCAAGACCAUGCGUAAAAUCGUAAAUAGUUCAUAAAAUGACUAUAAAAAACCAUUUAACGACGCCCAGAGC--- ...............(((.(.((.((((((((((.(((....).)).)))))..........((((((........))))))............))))))).).)))..--- ( -19.40, z-score = -1.68, R) >droPer1.super_0 11488009 109 + 11822988 AUCCCACCAACAAAAUCUUGAUGAUCGUUAUGCACGGCGCAAGACCAUGCGUAAAAUCGUAAAUAGUUCAUAAAAUGACUAUAAAAAACCAUUUAACGACGCCCAGAGC--- ...............(((.(.((.((((((((((.(((....).)).)))))..........((((((........))))))............))))))).).)))..--- ( -19.40, z-score = -1.68, R) >droWil1.scaffold_181130 11714496 106 - 16660200 --AUUGCGGUAGUCAGCAACGGCAUCGUUAUGCGCGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGAUCGUAAAA-GCAAUUUAACGACAACAAGCGA--- --.((((.((.(((....((((.....(((((((.(((....).)).)))))))..)))).....((((.......))))((.(((-....))).))))).))..))))--- ( -21.70, z-score = 0.25, R) >droVir3.scaffold_12855 9704094 109 - 10161210 --GUUGCGGUAGCCAAGGUGAUCAUCAUUAUGCGUGACGCAGGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAAUGCUCGUAAAA-UUAAUUUAACGACAAGAGCAUCAAC --.(((((((.((((..(((.....)))..)).)).(((((......)))))...)))))))............((((((......-...............)))))).... ( -22.00, z-score = -0.33, R) >droGri2.scaffold_14906 12762277 106 + 14172833 --GUUGCGGUAGUCAGAGUCACCAUCGUUGUGCGUGGCGCAAAACCGUCCGUAAAAUCGUAAAUAGAUCAUAAAACGCUCGUAAAA-UCAAUUUAACGACGGCAACAGC--- --((((((((..(....)..)))..(((((((((.((((......))))))).......(((((.(((......((....))...)-)).))))))))))))))))...--- ( -22.90, z-score = -0.11, R) >consensus _____________CAACAUUACGAUCGUUAUGCACGGCACAAGACCAUGCGUAAAAUCGUAAAUAGAUCAUAAAACGCCCAUAAAAAGCCAUUUAACGAGGCCCAGAAC___ ...........................(((((((.(((....).)).)))))))..((((((((..........................)))).))))............. ( -8.85 = -8.60 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:48 2011