| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,646,794 – 12,646,896 |
| Length | 102 |
| Max. P | 0.773642 |
| Location | 12,646,794 – 12,646,896 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.78 |
| Shannon entropy | 0.46636 |
| G+C content | 0.46260 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -11.73 |
| Energy contribution | -10.93 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12646794 102 - 27905053 -UCGUAAUGAUGUUUUAUCGAUUGGA-AAAUGAAUCCAACCAUUCAACUCCCUACAUUGCGCAUACGCGUAGUGGUCCCCCUAGUGACAUUAACAGCCUACCCC -......(((((((.........(((-...(((((......)))))........((((((((....)))))))).))).......)))))))............ ( -20.09, z-score = -1.41, R) >droEre2.scaffold_4770 8758446 102 + 17746568 -UCGCGAUGAUGUUUUAUCGAUCCAAUGAAUUAAUCCAACCAUUUAACUCUCCACAUUGCGCAUACGCAUAGUGGU-CGCCUAGUGACAUUAACAGCCUACCCC -..((..(((((((....(((......((.((((.........)))).)).((((..((((....))))..)))))-))......)))))))...))....... ( -18.10, z-score = -0.97, R) >droYak2.chr3R 17086920 102 + 28832112 -UCAAAUUGAUGUUUUAUCGAUUGGG-AAAUGAAACCAGCCAUUUAACUCUCCACAUUGCGCAUACGCGUAGUGGUCCCCCCAGUGACAUUAACAGCCUACCCC -.....((((((((......((((((-(((((........))))).........((((((((....)))))))).....))))))))))))))........... ( -24.90, z-score = -2.35, R) >droSec1.super_12 616222 102 + 2123299 -UCCUAAUGAUGUUCUAUCGAUUGGG-AAAUGAAUCCAACCAUUUAACUCCCUACAUUGCGCAUACGCGUAGUGGUCCCCCUAGUGACAUUAACAGCCUACCCC -......((((((((((......(((-(..(((((......)))))..))))..((((((((....)))))))).......))).)))))))............ ( -24.00, z-score = -2.46, R) >droSim1.chr3R 18688685 102 + 27517382 -UCGUAAUAAUGUUCUAUCGAUUGGG-AAAUGAAUCCAACCAUUUAACUCCCUACAUUGCGCAUACGCGUAGUGGUCCCCCUAGUGACAUUAACAGCCUACCCC -......((((((((((......(((-(..(((((......)))))..))))..((((((((....)))))))).......))).)))))))............ ( -23.90, z-score = -2.38, R) >droPer1.super_0 11487188 92 - 11822988 AUCGCUUCCAUGAUUUAUUGAUUC---GACCGAGCUAACCCGAUUUAGUGAUUGCGUUGCGCAUACGCAUAGUAGCCCACCAGCCAGUCGUGCCC--------- ........(((((((..(((....---......((.(((.(((((....))))).)))))((.(((.....)))))....)))..)))))))...--------- ( -16.40, z-score = 0.33, R) >consensus _UCGUAAUGAUGUUUUAUCGAUUGGG_AAAUGAAUCCAACCAUUUAACUCCCUACAUUGCGCAUACGCGUAGUGGUCCCCCUAGUGACAUUAACAGCCUACCCC .......(((((((.............(((((........)))))......((((..((((....))))..))))..........)))))))............ (-11.73 = -10.93 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:48 2011