| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,625,855 – 12,625,949 |
| Length | 94 |
| Max. P | 0.906219 |
| Location | 12,625,855 – 12,625,949 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 87.04 |
| Shannon entropy | 0.27405 |
| G+C content | 0.40412 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -23.08 |
| Energy contribution | -22.28 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12625855 94 + 27905053 UGGAGCGAGUAUUUCAGUGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUCGGUGUU------ ((((((((((((....)))))).......))))))......(((..(..((((((((((...........))))))))))..)...))).....------ ( -27.81, z-score = -2.03, R) >droSim1.chr3R 18667529 94 - 27517382 UGGAGCGAGUAUUUCAGUGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUCGGUGUU------ ((((((((((((....)))))).......))))))......(((..(..((((((((((...........))))))))))..)...))).....------ ( -27.81, z-score = -2.03, R) >droSec1.super_12 595258 94 - 2123299 UGGAGCGAGUAUUUCAGUGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUUGGUGUU------ ((((((((((((....)))))).......))))))..............((((((((((...........))))))))))..............------ ( -26.11, z-score = -1.56, R) >droYak2.chr3R 17065264 94 - 28832112 UGGAGCGAGUAUUUCAGUGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUCGGUGUU------ ((((((((((((....)))))).......))))))......(((..(..((((((((((...........))))))))))..)...))).....------ ( -27.81, z-score = -2.03, R) >droEre2.scaffold_4770 8737299 94 - 17746568 UGGAGCGAGUAUUUCAGUGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUCGGUGUU------ ((((((((((((....)))))).......))))))......(((..(..((((((((((...........))))))))))..)...))).....------ ( -27.81, z-score = -2.03, R) >droAna3.scaffold_13340 16427746 94 - 23697760 UGGGGCGAGUAUUUCAGAGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUAAUAUAAAAGCCGCCAACGGUUUUUAGUGUU------ .(((((((((......((((((.....))))))(((....)))))))..((((((((((...........))))))))))..))))).......------ ( -24.80, z-score = -1.37, R) >dp4.chr2 17612368 94 + 30794189 UGGGGCGAGUAUUUCAGUGCUUUAAAUGGGCUCCAUAAAAAUGAUUCAAUUGGCGGCUGGGUUGGAAUAAAAGCCGCCAACGGUUUUCGUUGUC------ ((((((((((((....)))))).......))))))....(((((..(..(((((((((.............)))))))))..)...)))))...------ ( -30.43, z-score = -2.37, R) >droWil1.scaffold_181130 11690804 98 - 16660200 UGGGGUGAAUAUUUCAAUGUUUUAAAUUAGCUCCAUAAAAAUGAUUCAAUUGGCGUUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUUUUUUAUUGUU-- .(((((((((((....)))))).......)))))(((((((.((..(..(((((.....((((........)))))))))..)..)))))))))....-- ( -19.41, z-score = -0.37, R) >droVir3.scaffold_12855 9677328 100 - 10161210 UGGGGCGAGUAUUUUAAUGCUCUGAAUGGGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGACUCAAAUAAAAGCCGUCAACGGUUGUUGCUUUUCUUGUU ((((((((((((....)))))).......))))))....((..(((...((((((((((...........)))))))))).)))..))............ ( -24.91, z-score = -1.05, R) >droGri2.scaffold_14906 12732967 100 + 14172833 UGGGGCGAGUAUUUCAAUGUUUUCAAUGGGUGAAAUAAAAAUGAUUCAAUUGGCGGUUCGGCUGAAAUAAAAGCCGUCAGCGGUUGUUGUUUGGCUUGUU ...(((((((....((((.....((((((((.(........).)))).))))((....(((((........)))))...))....))))....))))))) ( -22.70, z-score = -0.34, R) >consensus UGGAGCGAGUAUUUCAGUGCUUUAAAUGAGCUCCAUAAAAAUGAUUCAAUUGGCGGUUUGGCUGAAAUAAAAGCCGCCAACGGUUUUCGGUGUU______ ((((((((((((....)))))).......))))))......(((..(..((((((((((...........))))))))))..)...)))........... (-23.08 = -22.28 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:45 2011