| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,621,903 – 12,621,954 |
| Length | 51 |
| Max. P | 0.934925 |
| Location | 12,621,903 – 12,621,954 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 92.81 |
| Shannon entropy | 0.11505 |
| G+C content | 0.48039 |
| Mean single sequence MFE | -10.57 |
| Consensus MFE | -11.04 |
| Energy contribution | -10.72 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.16 |
| Structure conservation index | 1.04 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12621903 51 + 27905053 GGAAGGGCUUCAAAAGGGAGGAGCCAUCCACGGAACAUAUGGGAAAGUUAA (((..((((((........)))))).)))...................... ( -12.50, z-score = -1.82, R) >droSim1.chr3R 18663503 51 - 27517382 GGAAGGGCUUCAAAAGGGAGGAGUCAUCCACGGAACAUAUGGGAAAGUUAA (((..((((((........)))))).)))...................... ( -9.80, z-score = -1.21, R) >droSec1.super_12 591240 51 - 2123299 GGAAGGGCUUCAAAAGGGAGAAGCCAUCCGCGGAACAUAUGGGAAAGUUAA (((..((((((........)))))).)))...................... ( -13.00, z-score = -1.80, R) >droEre2.scaffold_4770 8732722 51 - 17746568 GGAAGGGCUUGAAAUGGGAGGAGCUAUCCGCGGAACAUAUGGAAAAGUUAA (((..(((((..........))))).)))...................... ( -7.00, z-score = 0.17, R) >consensus GGAAGGGCUUCAAAAGGGAGGAGCCAUCCACGGAACAUAUGGGAAAGUUAA (((..((((((........)))))).)))...................... (-11.04 = -10.72 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:44 2011