| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,610,963 – 12,611,056 |
| Length | 93 |
| Max. P | 0.815797 |
| Location | 12,610,963 – 12,611,056 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.69 |
| Shannon entropy | 0.39634 |
| G+C content | 0.40053 |
| Mean single sequence MFE | -21.27 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.29 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12610963 93 - 27905053 GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUUCGUU----------------------- (((((....(((((((....((((((.......))))))....)))))))......(((((.....))))).......)))))..........----------------------- ( -20.80, z-score = -2.35, R) >droSim1.chr3R 18652408 93 + 27517382 GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUU---CGUU-------------------- (((((....(((((((....((((((.......))))))....)))))))......(((((.....))))).......)))))......---....-------------------- ( -20.80, z-score = -2.35, R) >droSec1.super_12 580218 93 + 2123299 GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUU---CGUU-------------------- (((((....(((((((....((((((.......))))))....)))))))......(((((.....))))).......)))))......---....-------------------- ( -20.80, z-score = -2.35, R) >droYak2.chr3R 17049366 93 + 28832112 GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUU---CGUU-------------------- (((((....(((((((....((((((.......))))))....)))))))......(((((.....))))).......)))))......---....-------------------- ( -20.80, z-score = -2.35, R) >droEre2.scaffold_4770 8721342 93 + 17746568 GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUUCGUU----------------------- (((((....(((((((....((((((.......))))))....)))))))......(((((.....))))).......)))))..........----------------------- ( -20.80, z-score = -2.35, R) >droAna3.scaffold_13340 16412920 97 + 23697760 GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUUGGUUGCCU------------------- ((((((((.(((((((....((((((.......))))))....)))))))......(((((.....)))))................))))))))..------------------- ( -24.20, z-score = -2.72, R) >dp4.chr2 17591910 111 - 30794189 GCAGCUGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUGCCUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCUGAAUUACACGCUC-CGAGCUCGUCCGCC---- (((((((..(((((((....((((((.......))))))....)))))))......(((((.....)))))....)).)))))..........((..-((....))...)).---- ( -22.80, z-score = -0.45, R) >droPer1.super_0 11442212 111 - 11822988 GCAGCUGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUGCCUAAGUGUAUUACCUAUAAACAAUUUAUACAAACAUGCUGCUGAAUUACACGCUC-CGAGCUCGUUCGCU---- (((((((..(((((((....((((((.......))))))....)))))))......(((((.....)))))....)).)))))..............-((((....))))..---- ( -23.70, z-score = -0.10, R) >droWil1.scaffold_181130 11669461 112 + 16660200 GCAGCCGAAACGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAAGAUGCUGCCGAAUUACACGGUCACGAGCUGAAACAUU---- .((((((..(((((((....((((((.......))))))....)))))))...............................((((.......))))..)).)))).......---- ( -24.10, z-score = -1.58, R) >droVir3.scaffold_13047 13584163 116 + 19223366 GCUGCAAAAACGCUUGUAAUGAUGACUCUAAGUGCCGUUUCCUUGAGUGUAUUACCUAUAAAAAAUUUAUACAAAGCUGCUGCCAAAUUACCCGGACACGAACCGAGACAGCCGUG (((((......((((((((((...((((.(((.........))))))).)))))).(((((.....)))))..))))...............(((.......))).).)))).... ( -17.70, z-score = 0.56, R) >droMoj3.scaffold_6540 18116044 116 + 34148556 GCAGCAAAAACGCUUGUAAUGAUGACUCUAAGUGCCGUUUUCUUGAGUGUAUUACCUAUAAAAAAUUUAUACAAAGCUGCUGCCAAAUUACCCGGACACGAACCGAGACAGCCGUG ((((((.....((((((((((...((((.(((.........))))))).)))))).(((((.....)))))..)))))))))).........(((.......)))........... ( -20.80, z-score = -0.18, R) >droGri2.scaffold_14906 3166837 116 + 14172833 GCAGCCAGAACGCUUGUAAUGAUGACUCUAAGUGCCGUUUCCUUGAGUGUAUUACCUAUAAAAAAUUUAUACAAAGCUGCUGCCAAAUUACCCGGACACGAACCGAGACAACCGAG (((((......((((((((((...((((.(((.........))))))).)))))).(((((.....)))))..)))).))))).........(((.......)))........... ( -18.00, z-score = 0.03, R) >consensus GCAGCCGAAGCGCUUGUAAUGAUGACUCUAAGUGUCGUUUCCUUAAGUGUAUUACCUAUAAAAAAUUUAUACAAACAUGCUGCCGAAUUAC_CGGUC___________________ (((((....(((((((....((((.(.......).))))....)))))))......(((((.....))))).......)))))................................. (-15.62 = -15.29 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:43 2011