| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,604,622 – 12,604,682 |
| Length | 60 |
| Max. P | 0.551246 |
| Location | 12,604,622 – 12,604,682 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 82.07 |
| Shannon entropy | 0.33044 |
| G+C content | 0.40903 |
| Mean single sequence MFE | -14.88 |
| Consensus MFE | -10.01 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12604622 60 + 27905053 ----CCGAUGCAGCAUUGGCGUUUCUAUGUGUGCUGCAAUCAGCUUAUACACAGAAAAAAAUGU ----..((((((((((..((((....))))))))))).)))....................... ( -15.00, z-score = -0.96, R) >droSim1.chr3R 18645911 60 - 27517382 ----CCGAUGCAGCAUUUGCGUUCCUAUGUGUGCUGCAAUCAGUUUAUACACAGAAAAAAAUGU ----..((((((((((..((((....))))))))))).)))....................... ( -15.00, z-score = -1.73, R) >droSec1.super_12 574043 60 - 2123299 ----CCGAUGCAGCAUUUGCGUUCCUAUGUGUGCUGCAAUCAGUUUAUACACAGAAAAAAAUGU ----..((((((((((..((((....))))))))))).)))....................... ( -15.00, z-score = -1.73, R) >droYak2.chr3R 17042773 60 - 28832112 ----CCGAUGCAGCAUUUACGUUUCUAUGUGUGCUGCAAUCAGCUUAUACACAGAAAAAAAUGA ----..((((((((((..((((....))))))))))).)))....................... ( -14.70, z-score = -1.83, R) >droEre2.scaffold_4770 8714610 60 - 17746568 ----CCGAUGCAGCCUUUACGUUUCUAUGUGUGCUGCAAUCAGUUUCUACACGGAAAAAAAUGU ----(((.((((((...(((((....))))).))))))....((....)).))).......... ( -15.30, z-score = -2.19, R) >droAna3.scaffold_13340 16407086 64 - 23697760 GGCAUACCUCAAGCAUCCUUGUGUCUAUGUGAGCUGCAGUUAGCCAAGACACAGAGAAAAAUUA .((.........)).((.((((((((...((.((((....)))))))))))))).))....... ( -14.30, z-score = -0.68, R) >consensus ____CCGAUGCAGCAUUUGCGUUUCUAUGUGUGCUGCAAUCAGCUUAUACACAGAAAAAAAUGU ........((((((((..((((....)))))))))))).......................... (-10.01 = -10.53 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:43 2011