| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,596,817 – 12,596,915 |
| Length | 98 |
| Max. P | 0.956360 |
| Location | 12,596,817 – 12,596,915 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.20 |
| Shannon entropy | 0.25160 |
| G+C content | 0.34177 |
| Mean single sequence MFE | -26.89 |
| Consensus MFE | -17.83 |
| Energy contribution | -17.77 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12596817 98 + 27905053 ------------------GACGCUUUGUUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ------------------((((....((((((((((((((((((.-.(.....)...)))))))))))))))))))))).........((((..................))))... ( -24.67, z-score = -2.27, R) >droSim1.chr3R 18637787 98 - 27517382 ------------------GACGCUUUGUUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ------------------((((....((((((((((((((((((.-.(.....)...)))))))))))))))))))))).........((((..................))))... ( -24.67, z-score = -2.27, R) >droSec1.super_12 566061 98 - 2123299 ------------------GACGCUUUGUUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGGAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ------------------((((....((((((((((((((((((.-.(.....)...)))))))))))))))))))))).........((((..................))))... ( -24.27, z-score = -1.95, R) >droYak2.chr3R 17034800 98 - 28832112 ------------------GACGCUUUGUUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ------------------((((....((((((((((((((((((.-.(.....)...)))))))))))))))))))))).........((((..................))))... ( -24.67, z-score = -2.27, R) >droEre2.scaffold_4770 8706869 98 - 17746568 ------------------GACGCUUUGUUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ------------------((((....((((((((((((((((((.-.(.....)...)))))))))))))))))))))).........((((..................))))... ( -24.67, z-score = -2.27, R) >droAna3.scaffold_13340 16400559 101 - 23697760 ---------------GACGGCAGUGUGUUUUGUUUACGGCAUUUG-UCGAGUUGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ---------------...((((((((.(((((((((((((((((.-...........)))))))))))))))))((((..(.....)..)))).........))))....))))... ( -27.70, z-score = -2.42, R) >dp4.chr2 17577614 99 + 30794189 ---------------GACGGCAGUG--UUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ---------------....((((((--(((((((((((((((((.-.(.....)...))))))))))))))))))........)))))((((..................))))... ( -27.67, z-score = -3.05, R) >droPer1.super_0 11427870 99 + 11822988 ---------------GACGGCAGUG--UUUUGUUUACGGCAUUUG-UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ---------------....((((((--(((((((((((((((((.-.(.....)...))))))))))))))))))........)))))((((..................))))... ( -27.67, z-score = -3.05, R) >droWil1.scaffold_181130 11650517 115 - 16660200 GGAGUUGUAGUGUUGUGGGAGGUGGCAUUUUGUUUACGGCAUUUU--CAAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ((..(((...(((((..(...((((((((((((((((((((((((--.........)))))))))))))))))).))))))...)..)))))..............)))...))... ( -33.23, z-score = -3.94, R) >droVir3.scaffold_13047 13567456 98 - 19223366 -----------------GGUGGCGGCGUUUUGUUUACGGCUCUUU--CGAGCUGUAAAAAUGUCGUAAACGCAAUUGUUAUGAAUUGCGGUAAAUUAAAUAAACAUCAAAUGCCAAA -----------------((((((((((((((...((((((((...--.))))))))))))))))))...(((((((......)))))))..............)))).......... ( -33.30, z-score = -4.57, R) >droMoj3.scaffold_6540 18099683 100 - 34148556 -----------------GACGGCGGCAUUUUGUUUACGGCCUUUCGUCGGGCUGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGUAAAUUAAAUAAACAUCAAAUGCCAAA -----------------...(((((((((((...((((((((......)))))))))))))))).........(((((........)))))....................)))... ( -25.50, z-score = -1.55, R) >droGri2.scaffold_14906 3151972 97 - 14172833 -----------------GACGACCGCAUUUUGUUUACGACUUUUU---GAGCUGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGUAAAUUAAAUAAACAUCAAAUGCCAAA -----------------....((((((((((((((((((((((((---(.....)))))).)))))))))))))...........)))))).......................... ( -24.60, z-score = -3.25, R) >consensus __________________GACGCUGUGUUUUGUUUACGGCAUUUG_UCGAGUAGUAAAAAUGUCGUAAACGAAAUUGUUAUGAAUUGCGGCAAAUUAAAUAAACAUCAAAUGCCAAA ..........................((((((((((((((.(((...(.....)...))).)))))))))))))).............((((..................))))... (-17.83 = -17.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:42 2011