| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,668,079 – 7,668,136 |
| Length | 57 |
| Max. P | 0.566378 |
| Location | 7,668,079 – 7,668,136 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 78.79 |
| Shannon entropy | 0.41127 |
| G+C content | 0.39287 |
| Mean single sequence MFE | -11.45 |
| Consensus MFE | -4.75 |
| Energy contribution | -4.28 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7668079 57 + 23011544 AAUUAUAACUGGCUAUGGG-AUAAUUGUUAUCUGGCUGCUGACGG-AUAACUGAUGAAA ((((((..(.......)..-))))))((((((((........)))-)))))........ ( -11.90, z-score = -3.19, R) >droSim1.chr2L 7465799 52 + 22036055 AAUUAUA-CUGGCUAUGGG-AUA-UUGU-AUCUGGCUGCUGACGG-AUAAUGAGAGA-- .(((((.-(((((..(.((-(((-...)-)))).)..))...)))-)))))......-- ( -7.40, z-score = -0.10, R) >droSec1.super_3 3182355 57 + 7220098 AAUUAUAACUGGCUAUGGG-AUAAUUGUUAUCUGGCUGCUGACGG-AUAACUGAUGAGA ((((((..(.......)..-))))))((((((((........)))-)))))........ ( -11.90, z-score = -2.66, R) >droYak2.chr2L 17100112 57 - 22324452 AAUUAUAACUGGCUAUGGG-AUAAUUGUUAUCUGGCUGCUGACGG-AUAACUGAUGAGA ((((((..(.......)..-))))))((((((((........)))-)))))........ ( -11.90, z-score = -2.66, R) >droEre2.scaffold_4929 16597126 58 + 26641161 AAUUAUAACUGGCUAUGGAUAUAAUUGUUAUCUGGCUGCUGACGG-AUAGCUGAUGAUA (((((((.((......)).)))))))((((((((........)))-)))))........ ( -12.50, z-score = -2.12, R) >dp4.chr4_group3 1563862 51 + 11692001 AAUUAUGGACCGAAAGGGG-AUAAUUGUCAGCUGGAAGAUGAUGGCAUGGCA------- ((((((...((....))..-))))))((((((((........)))).)))).------- ( -13.10, z-score = -2.43, R) >consensus AAUUAUAACUGGCUAUGGG_AUAAUUGUUAUCUGGCUGCUGACGG_AUAACUGAUGA_A ((((((..(((....)))..))))))((((((((........))).)))))........ ( -4.75 = -4.28 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:11 2011