| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,590,935 – 12,591,040 |
| Length | 105 |
| Max. P | 0.743534 |
| Location | 12,590,935 – 12,591,040 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.91 |
| Shannon entropy | 0.40353 |
| G+C content | 0.37844 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.47 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12590935 105 - 27905053 AAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAA----ACCGUGACAGUUUCGUU-AAAUGCUUUUUCUUUAUCUGACGUAUUCCUCUCCUUUCGGUU--------- ......((((((((((.....))))..((((((((((((.......----..)))))..))))))))-))))).....................................--------- ( -16.00, z-score = -0.16, R) >droSim1.chr3R 18632117 105 + 27517382 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAA----ACCGUGACAGUUUCGUU-AAAUGCUUUUUCUUUAUCUGACUUAUUUCACUUCUUUCGGUU--------- ((((((((((((((((.....))))..((((((((((((.......----..)))))..))))))))-))))).......))))))........................--------- ( -17.81, z-score = -1.12, R) >droSec1.super_12 560393 105 + 2123299 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAA----ACCGUGACAGUUUCGUU-AAAUGCUUUUUCUUUAUCUGACUUAUUUCUCUUCUUUCGGUU--------- ((((((((((((((((.....))))..((((((((((((.......----..)))))..))))))))-))))).......))))))........................--------- ( -17.81, z-score = -1.17, R) >droYak2.chr3R 17028927 106 + 28832112 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAA----ACCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGACUUAUUUCUCUCCUUUCGGUG--------- ((((((((((((((((.....))))).((((((((((((.......----..)))))..)))))))..))))).......))))))........................--------- ( -17.21, z-score = -0.73, R) >droEre2.scaffold_4770 8701206 106 + 17746568 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAA----ACCGUGACUGUUUCGUUAAAAUGAUUUUUCUUUAUCUGACUUAUUUCUCUCGUUUCGGUG--------- ((((((((((((((((.....))))).((((((((((((.......----..)))))..)))))))..))))).......))))))........................--------- ( -17.21, z-score = -0.17, R) >droAna3.scaffold_13340 16395327 100 + 23697760 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCGG----GCCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGAAUUAUUUUUCUGACU--------------- ((.(((((((((((((.....))))).((((((((((((((....)----).)))))..)))))))..))))).))).))....((.(((......))).))..--------------- ( -21.00, z-score = -1.33, R) >dp4.chr2 17571453 105 - 30794189 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCC-A----GUCGUGACAGUUUCGUUAAAAUGUUUUUUCUCCAUCUGACUUAUUUCCAUUGUUGGGGUU--------- ((.(((((((((((((.....))))).((((((((((((.(...-.----).)))))..)))))))..))))))))..))....((..((...........))..))...--------- ( -24.10, z-score = -1.18, R) >droPer1.super_0 11421568 105 - 11822988 GAUAAACAUUUAUUGGGCAAUCCAAUCACGAAACUCACGUCCCC-A----GUCGUGACAGUUUCGUUAAAAUGUUUUUUCUCCAUCUGACUUAUUUCCUUUGUUGGUGUU--------- ((.(((((((((((((.....))))).((((((((((((.(...-.----).)))))..)))))))..))))))))..))..((.(..((...........))..)))..--------- ( -23.90, z-score = -2.39, R) >droWil1.scaffold_181130 11644935 119 + 16660200 GAUAAACAUUUAUUGGGCAAUCCCAUCACGGAAUUCACGUUUCCAGUCGUUUCGUGACAGUUUCGUUAAAAUGUUUGCCUUUUUUUCAAACCAUCUGAGUUCAUUUGCUGGCUUUGUUU ..(((((((((..((((....))))..((((((((((((.............)))))..)))))))..))))))))).........(((((((.(.((.....)).).))).))))... ( -22.72, z-score = -0.44, R) >droVir3.scaffold_13047 13561434 98 + 19223366 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGACUUCACGUUCGCAG-----UCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUCU--CUUCUCUUUUCAUU-------------- ..((((((...(((((.....))))).((((((((((((.......-----.))))).)).)))))............)))))).....--..............-------------- ( -16.40, z-score = -1.29, R) >droMoj3.scaffold_6540 18092473 98 + 34148556 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAAUUCACGUUCGUAG-----UCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUUU--CUUCUCAUUUCAUU-------------- ..((((((...(((((.....))))).((((((((((((.......-----.)))))..)))))))............)))))).....--..............-------------- ( -17.30, z-score = -1.68, R) >droGri2.scaffold_14906 3147907 99 + 14172833 GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAAUUCACGUUCGCAG-----UCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUUU-CCUUCCCUUUCCAUU-------------- ..((((((...(((((.....))))).((((((((((((.......-----.)))))..)))))))............)))))).....-...............-------------- ( -17.30, z-score = -1.23, R) >consensus GAUAAACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAA____ACCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGACUUAUUUCUCUUCUUUCGGUU_________ ......((((((((((.....))))).((((((((((((.............)))))..)))))))..))))).............................................. (-14.60 = -14.47 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:41 2011