| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,574,396 – 12,574,489 |
| Length | 93 |
| Max. P | 0.833554 |
| Location | 12,574,396 – 12,574,489 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 60.79 |
| Shannon entropy | 0.76674 |
| G+C content | 0.50376 |
| Mean single sequence MFE | -25.84 |
| Consensus MFE | -11.21 |
| Energy contribution | -10.86 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12574396 93 + 27905053 GUGGCUCUAAAACUGGACCGACAAGAUGACUCUAAAACUAUGAAAACCGA-----------AUCCAUAGAUGGCGCAUGC-AACUCAGU-----GCCGCCAUCUGACGUA ((((.((((....)))))).))............................-----------.....((((((((((((..-......))-----).)))))))))..... ( -21.00, z-score = -1.47, R) >droGri2.scaffold_14906 3133913 103 - 14172833 AUGACUGUCAAACUAGCCAUGCAGUGACUCUCAGA-CCAACAUCGAUAUGGAUGCAUAACGACCAAUAGAUGGCGCAUGC-AAUAUGCU-----GCUGCCAUCUAUUGCA .(((..(((..(((.((...))))))))..)))..-......(((.((((....)))).))).((((((((((((((.((-.....)))-----)).))))))))))).. ( -32.60, z-score = -2.44, R) >droMoj3.scaffold_6540 18077001 104 - 34148556 GUGGCUGUCAAACCGCUCAAGCAGUGACUCUCAAAGUCAGCAUUGACGUCAGCGCAUAACGACCCAUAGAUGGCGCAUGC-AAUACGCU-----GCGGCCAUCUAUUGCA .((((.(((((...((....))..(((((.....)))))...)))))))))..(((.........((((((((((((.((-.....)))-----)).)))))))))))). ( -34.40, z-score = -1.32, R) >droVir3.scaffold_13047 13548241 103 - 19223366 GUGGCAGUCAAACCGCACAAGCAGUGACUGCAAAA-CCAACAUUGACAUAGGCGCAUAAUGACCAAUAGAUGGCGCAUGC-AACAUGCU-----GCUGCCAUCUAUUGCA ((((((((((....((....))..)))))))....-((............)))))........((((((((((((((.((-.....)))-----)).))))))))))).. ( -36.70, z-score = -2.62, R) >droPer1.super_0 11408739 81 + 11822988 GUGACUCUAAAACUGC-------------CCUUGGAGAUGAAGCGGCCCA-----------AGCAAUAGAUGGCGCGCGCAGGCACUAC-----ACUGCCAUCUGGCGUA ..............((-------------(.....(((((..((((((..-----------..........))).)))((((.......-----.))))))))))))... ( -21.90, z-score = 0.86, R) >dp4.chr2 17558904 81 + 30794189 AUGACUCUAAAACUGC-------------CCUUGGAGAUGAAGCGGCCCA-----------AGCAAUAGAUGGCGCGCGCAGGCACUAC-----ACUGCCAUCUGGCGUA ..............((-------------(.....(((((..((((((..-----------..........))).)))((((.......-----.))))))))))))... ( -21.90, z-score = 0.66, R) >droAna3.scaffold_13340 16384397 96 - 23697760 GUGGCUCUAGAACUGC-----CAGUAGCUCCCAAA-CCUGUGUUGACAUA-------AAGUACCUAUAGAUGGCGCAUGC-AGAACAUCUGAAAGAUGCCAUCUAGUGGA .((((.........))-----)).......(((..-..((((....))))-------.........((((((((((...(-((.....)))...).))))))))).))). ( -25.00, z-score = -0.70, R) >droEre2.scaffold_4770 8690592 93 - 17746568 GUGGCUCUAAAACUGGACGGGUAAGCUGACUCUCAAACUAUGGAAACCGA-----------AUGCAUAGAUGGCGCAUGC-GACUCAGU-----GCCGCCAUCUGACGUA .(((.((((......((.((((......))))))......))))..))).-----------.....((((((((((((..-......))-----).)))))))))..... ( -23.70, z-score = -0.11, R) >droYak2.chr3R 17018290 92 - 28832112 GUGGCUCUAAAACUGGACGGGCAAC-UGACUCUCAAACUAUGGAAACCGA-----------AUUCAUAGAUGGCGCAUGC-GACUCAGU-----GCCGCCAUCUGACGUA (((((((((....))))..((((.(-(((.((.....(((((((......-----------.)))))))...((....))-)).)))))-----))))))))........ ( -26.30, z-score = -1.70, R) >droSec1.super_12 549933 93 - 2123299 GUGGCUCUAAAACUGGACGAACAAUAUGAUUCCAAAACUAUGAAAACCGA-----------AUCCAUAGAUGGCGCAUGC-GACUCAGU-----GCCGCCAUCUGACGUA ................(((........(((((................))-----------)))..((((((((((((..-......))-----).))))))))).))). ( -20.39, z-score = -1.06, R) >droSim1.chr3R 18621574 93 - 27517382 GUGGCUCUAAAACUGGACGGGCAAGAUGACUCCAAAACUAUGAAAACCGA-----------AUCCCUAGAUGGCGCAUGC-GACUCAGU-----GCCGCCAUCUGACGUA ..............((((((.((((.(........).)).))....))).-----------.))).((((((((((((..-......))-----).)))))))))..... ( -20.30, z-score = 0.18, R) >consensus GUGGCUCUAAAACUGGACGGGCAAUAUGACUCUAAAACUAUGGAGACCGA___________AUCCAUAGAUGGCGCAUGC_GACACAGU_____GCCGCCAUCUGACGUA ..................................................................(((((((((.....................)))))))))..... (-11.21 = -10.86 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:39 2011