| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,566,774 – 12,566,872 |
| Length | 98 |
| Max. P | 0.544530 |
| Location | 12,566,774 – 12,566,872 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 52.70 |
| Shannon entropy | 0.95279 |
| G+C content | 0.56388 |
| Mean single sequence MFE | -32.04 |
| Consensus MFE | -6.06 |
| Energy contribution | -6.20 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 2.11 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544530 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 12566774 98 + 27905053 -CGCCAGCCGGAACCCGAUAUC--CAUU-ACCAUCCG--AUGCUGCAGCCAGGUGG-AGUG-CCACCCAUCUGGUCAUCUGU-AUGCAUGUUAU-GGCCACA-CUCACG-- -.((((..((((....(((...--.)))-....))))--(((((((((((((((((-....-....))))))))....))))-).))))....)-)))....-......-- ( -30.10, z-score = -0.73, R) >droEre2.scaffold_4770 8682754 97 - 17746568 --CGCAGCCGGAACCCGAUAUC--CAUU-ACCAUCCG--AUGCUGCGGCCAGGUGG-AGUA-CCACCUAUCUGGCCAUCCGA-GUACAUGUUAU-GGCCACA-CUCACG-- --.(((((((((....(((...--.)))-....))))--..)))))((((((((((-....-....))))))))))....((-((....((...-.))...)-)))...-- ( -32.60, z-score = -2.01, R) >droYak2.chr3R 17009733 97 - 28832112 --CGCAGCCGGAACCCGAUACC--CAUU-ACCAUCCG--AUGCUGCGGCCAGGUGG-AGUA-CCACCUAUCUGGCCAUCAUA-AUACAUGUUAU-GGCCACA-CUCACG-- --.(((((((((....(((...--.)))-....))))--..)))))((((((((((-....-....)))))))))).(((((-((....)))))-)).....-......-- ( -33.30, z-score = -3.02, R) >droSec1.super_12 542498 106 - 2123299 CGCCCAGCGGGAAGCCGAUGUC--CAUUUACCAUGCGG-AUGCUGCGGCCAGGUGGGAGUGGCCUCCCAUCUGGUCAUCCCGUAUGCAUGGUAUCGGCCCCAUCUCCCG-- .......(((((.(((((((.(--(((....(((((((-(((.....((((((((((((....))))))))))))))).))))))).)))))))))))......)))))-- ( -52.20, z-score = -3.23, R) >droSim1.chr3R 18614027 98 - 27517382 -CGCCAGCCGGAACCCGAUAUC--CAUU-ACCAUCCG--AUGCUGCGGCCAGGUGG-AGUG-CCACCCAUCUGGUCAUCCGU-AUGCAUGUUAU-GGCCACA-CUCACG-- -.((((..((((....(((...--.)))-....))))--(((((((((((((((((-....-....))))))))....))))-).))))....)-)))....-......-- ( -31.60, z-score = -0.78, R) >droMoj3.scaffold_6540 18066802 89 - 34148556 --------AGCAAACCAGAAUCA-CGGCCACAAGCAGU-ACGAUUCCUCGUACCAGUCGCCAAUCCGUGCCAGCUAAUUGCC---UCAUGUUGCUGCUCUUG--------- --------(((((..........-.(((.((.....((-((((....))))))..)).)))....((((...((.....)).---.))))))))).......--------- ( -19.20, z-score = -0.62, R) >dp4.chr2 17551902 77 + 30794189 -------------CUCGAUCUC--CAUUCAGAGGCCCG-ACUCCUCGAGUGGACUCGAGUGGAGCUGAAGCUGAGCUUGCAG---AUACACUUGUG--------------- -------------.......((--(((((.((((....-...)))))))))))(.((((((...(((((((...)))).)))---...)))))).)--------------- ( -26.90, z-score = -1.10, R) >droWil1.scaffold_181130 11618485 105 - 16660200 -GCAAAACUUGAACCUGGCAGCGGCAGCCACUAAUAGUUGCGUAUUAGCCAAGUAUUAGUUGGCAUUUGU-UAGUCUUUGUG---CCAUGGCAA-CGCCAAAGCCCCCAAG -......((((.....(((...(((.((((((((((.(((.((....))))).)))))))((((((..(.-....)...)))---))).)))..-.)))...)))..)))) ( -30.40, z-score = -0.75, R) >consensus __CCCAGCCGGAACCCGAUAUC__CAUU_ACCAUCCG__AUGCUGCGGCCAGGUGG_AGUG_CCACCUAUCUGGUCAUCCGG_AUACAUGUUAU_GGCCACA_CUCACG__ ...............................................(((((((((..........))))))))).................................... ( -6.06 = -6.20 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:38 2011