| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,525,344 – 12,525,442 |
| Length | 98 |
| Max. P | 0.990886 |
| Location | 12,525,344 – 12,525,442 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 90.71 |
| Shannon entropy | 0.18814 |
| G+C content | 0.32914 |
| Mean single sequence MFE | -20.33 |
| Consensus MFE | -18.94 |
| Energy contribution | -19.11 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.990886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12525344 98 - 27905053 ACUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCCCGUUC---------------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))............---------------- ( -19.50, z-score = -2.63, R) >droSim1.chr3R 18572515 98 + 27517382 ACUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCCCGUUC---------------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))............---------------- ( -19.50, z-score = -2.63, R) >droSec1.super_12 501258 98 + 2123299 ACUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCCCGUUC---------------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))............---------------- ( -19.50, z-score = -2.63, R) >droYak2.chr3R 16967586 98 + 28832112 ACUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCCCGUUC---------------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))............---------------- ( -19.50, z-score = -2.63, R) >droEre2.scaffold_4770 8640810 98 + 17746568 ACUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCCCGUUC---------------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))............---------------- ( -19.50, z-score = -2.63, R) >droAna3.scaffold_13340 16338200 97 + 23697760 GCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUUCGUCC----------------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))...........----------------- ( -19.50, z-score = -2.19, R) >dp4.chr2 17508652 98 - 30794189 GCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCGCUGCC---------------- ((.((..(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))......)).)).---------------- ( -22.60, z-score = -2.45, R) >droPer1.super_0 11357345 98 - 11822988 GCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCGCUGCC---------------- ((.((..(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))......)).)).---------------- ( -22.60, z-score = -2.45, R) >droWil1.scaffold_181130 11568084 104 + 16660200 GCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUUCUUCCUCUUUCU---------- .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))..................---------- ( -19.50, z-score = -2.36, R) >droVir3.scaffold_13047 13487607 104 + 19223366 CCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUGGAGUUUUUUCUCUGUUGUUGCU---------- ...(((.....)))......((((((((((((...((((((((....)).))))))....))))))))))))..(((..(..(((......)))..)..)))..---------- ( -20.30, z-score = -1.27, R) >droMoj3.scaffold_6540 18010486 98 + 34148556 CCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUGUUUUUUUUUUC---------------- ......((((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..))))))))...........---------------- ( -21.00, z-score = -3.09, R) >droGri2.scaffold_14906 3072789 114 + 14172833 CCUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUGUUUUUUUUUAUGCCCCUCUCUCUCUUU ......((((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..))))))))........................... ( -21.00, z-score = -2.94, R) >consensus ACUGCUUAGUUAGCCUCAUUUAGAAAACGUUUGUUAUGCAAUGCCAACAUUUGUAUUCGAAAAUGUUUUUUAUUCAGUUGUUGACUUUUUUCCCUUUC________________ .......(((((((..(...((((((((((((...((((((((....)).))))))....))))))))))))....)..)))))))............................ (-18.94 = -19.11 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:30 2011