Locus 10258

Sequence ID dm3.chr3R
Location 12,524,123 – 12,524,215
Length 92
Max. P 0.798644
window14105

overview

Window 5

Location 12,524,123 – 12,524,215
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 95.11
Shannon entropy 0.08336
G+C content 0.55217
Mean single sequence MFE -28.70
Consensus MFE -27.00
Energy contribution -27.72
Covariance contribution 0.72
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.72
SVM RNA-class probability 0.798644
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12524123 92 + 27905053
GGCCCUGACCACUUGACUCAAGUGGCUGCGACAGAUUGGCGGCUUUUCGUCGCGAUUUUCACUGCUUUUCAGCACUGCCUAACUGGCGCCAU
(((.(((((((((((...)))))))..(((..(((.(.(((((.....))))).).)))...)))...))))....(((.....)))))).. ( -30.10, z-score =  -1.63, R)
>droSim1.chr3R 18571282 92 - 27517382
GGCCCUGACCACUUGACUCAAGUGGCUGCGACAGAUUGGCGGCUUUUCGUCGCGAUUUUCACCGCUUUUCAGUACUGCCUAACUGGCGCCAU
(((.(((((((((((...)))))))..(((..(((.(.(((((.....))))).).)))...)))...))))....(((.....)))))).. ( -32.00, z-score =  -2.38, R)
>droSec1.super_12 500023 92 - 2123299
GGCCCUGACCACUUGACUCAAGUGGCUGCGACAGAUUGGCGGCUUUUCGUCGCGAUUUUCACCGCUUUUCAGUACUGCCUAACUGGCGCCAU
(((.(((((((((((...)))))))..(((..(((.(.(((((.....))))).).)))...)))...))))....(((.....)))))).. ( -32.00, z-score =  -2.38, R)
>droYak2.chr3R 16966299 92 - 28832112
GGCCCUGACCACUUGACUCAAGUCUCUGCGACAGAUUGGCGGCUUUUCGUCGCGAUUUUCCCAGCUUUUUAGCAUUGCCUAACUGGCGCCAU
(((.(((.(((...(((....)))..)).).)))....(((((.....)))))..........(((....)))...(((.....)))))).. ( -23.60, z-score =  -0.27, R)
>droEre2.scaffold_4770 8639518 92 - 17746568
GGCCCUGACCACUUGACUCAAGUCUCUGCGACAGAUUGGCGGCUUUUCGUCGCGAUUUUCCCCGCUUUUCAGCAUUGCCUCACUGGCGCCAU
(((.((((......(((....)))...(((..(((.(.(((((.....))))).).)))...)))...))))....(((.....)))))).. ( -25.80, z-score =  -0.86, R)
>consensus
GGCCCUGACCACUUGACUCAAGUGGCUGCGACAGAUUGGCGGCUUUUCGUCGCGAUUUUCACCGCUUUUCAGCACUGCCUAACUGGCGCCAU
(((.(((((((((((...)))))))..(((..(((.(.(((((.....))))).).)))...)))...))))....(((.....)))))).. (-27.00 = -27.72 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:29 2011