| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,507,029 – 12,507,120 |
| Length | 91 |
| Max. P | 0.724234 |
| Location | 12,507,029 – 12,507,120 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 62.50 |
| Shannon entropy | 0.70570 |
| G+C content | 0.51487 |
| Mean single sequence MFE | -28.01 |
| Consensus MFE | -9.96 |
| Energy contribution | -10.54 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12507029 91 + 27905053 ----------AACUAGCAACUCGCAUCUCG----GAUCUCGGAUCUGGAGACUCCGGGGUCAUUAGGGGCGACAUAAAACAUGUUUUUGUUGCAGCGGCCAUGGA----------- ----------..(((.....((((..(((.----(((((((((...(....))))))))))....)))((((((.((((....)))))))))).))))...))).----------- ( -30.50, z-score = -2.05, R) >droSim1.chr3R 18554613 91 - 27517382 ----------AACUAGCAACUAGCAACUCG----CAUCUCGGAUCUGGAGACUCCGGGGUCAUUAGGGGCGACAUAAAACAUGUUUUUGUUGCAGCGGCCAUGGA----------- ----------..(((((.....))...(((----(((((((((...(....)))))))))........((((((.((((....)))))))))).))))...))).----------- ( -25.00, z-score = -0.65, R) >droSec1.super_12 482964 98 - 2123299 ---AACUAGCAACUAGCAACUCGCAUCUCG----GAUCUCGGAUCUGGAGACUCCGGGGUCAUUAGGGGCGACAUAAAACAUGUUUUUGUUGCAGCGGCCAUGGA----------- ---..(((((..((.(((((((((..((..----(((((((((...(....))))))))))...))..))))(((.....))).....)))))))..))..))).----------- ( -32.30, z-score = -2.17, R) >droYak2.chr3R 16949013 98 - 28832112 ---AACUCGCAACUAGCAACUCGCAUCUCG----GAUCUCAGAUCUGGAGACUCCGGGGUCAUUAGGGGCGACAUAAAACAUGUUUUUGUUGCAGCGGCCAUGGA----------- ---...((((..(((((.....))((((((----((((((.......)))).))))))))...)))..((((((.((((....)))))))))).)))).......----------- ( -29.00, z-score = -1.15, R) >droAna3.scaffold_13340 16321289 76 - 23697760 -----------------AUCUCGAGACUC-----UGUC-CGGGCUCUG---GUCCGGGGUCAUUAGGGGCGACAUAAAACAUGUUUUUGUUGCAGAGCACGA-------------- -----------------...(((.(.(((-----(.((-(((((....---)))))))..........((((((.((((....))))))))))))))).)))-------------- ( -25.10, z-score = -1.31, R) >dp4.chr2 17489318 103 + 30794189 ----------GAGAGUCGCCUCGAGACUCGACGCUGUCUCUGGCCCUG---CUCCGGGGUCAUUAGGGGCGACAUAAACCAUGUUUUUGUUGCAGUGGCCGACAGUAUGUACGGCA ----------....(((((((((((((........)))))((((((((---...))))))))...))))))))......(((((.......))).))((((((.....)).)))). ( -42.50, z-score = -2.28, R) >droPer1.super_0 11337600 91 + 11822988 ----------GAGAGUCGCCUCGAGACUCGACGCUGUCUCUGGCCCUG---CUCCGGGGUCAUUAGGGGCGACAUAAACCAUGUUUUUGUUGCAGUGGCCGACA------------ ----------....(((((((((((((........)))))((((((((---...))))))))...)))))))).....((((((.......))).)))......------------ ( -37.30, z-score = -2.06, R) >droWil1.scaffold_181130 11544545 101 - 16660200 CUUGCUCUGCUUUCGGUCCGUUCUGCUUCACUCUGCUCUGUUGUAGUG---CUCGGAGGUCAUUAAGGGCGACAUAAAACAUGUUUUUGUUGCAAUGGCCAUAA------------ ................((((....((......((((......)))).)---).))))(((((((....((((((.((((....)))))))))))))))))....------------ ( -24.30, z-score = -0.16, R) >droVir3.scaffold_13047 13464073 76 - 19223366 --------------------------CGGAGGACGGCGACUCGACUCGA--CUCGGGGGUCAUUAAGGACGACAUAAAACAUGUUUUUGUUGCAAUGGCCAUAA------------ --------------------------((.....))....(((((.....--.)))))(((((((...(.(((((.((((....)))))))))))))))))....------------ ( -17.20, z-score = -0.21, R) >droGri2.scaffold_14906 3049597 74 - 14172833 ---------------------------CGACGACGA-GAGUCAACUCGA--CUCGGGGGUCAUUAAGGACGACAUAAAACAUGCUUUUGUUGCAAUGGCAAUAA------------ ---------------------------.(((..(..-(((((.....))--))).)..))).........................(((((((....)))))))------------ ( -16.90, z-score = -1.20, R) >consensus __________AACUAGCAACUCGCAACUCG____GAUCUCUGAUCUGGA__CUCCGGGGUCAUUAGGGGCGACAUAAAACAUGUUUUUGUUGCAGUGGCCAUGA____________ ............................................((((.....))))((((.......((((((.(((.....))).))))))...))))................ ( -9.96 = -10.54 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:21 2011