| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,491,565 – 12,491,655 |
| Length | 90 |
| Max. P | 0.962114 |
| Location | 12,491,565 – 12,491,655 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 95.67 |
| Shannon entropy | 0.09177 |
| G+C content | 0.34474 |
| Mean single sequence MFE | -23.69 |
| Consensus MFE | -15.88 |
| Energy contribution | -15.82 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.50 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.962114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12491565 90 + 27905053 CUUCAUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCCC .........(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).))))). ( -25.84, z-score = -3.96, R) >droSim1.chr3R 18537594 90 - 27517382 CUUCAUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCCC .........(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).))))). ( -25.84, z-score = -3.96, R) >droSec1.super_12 467554 90 - 2123299 CUUCAUUAAGGGCGCAUAAAAGAAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCCC .........(((((.(((((((.(((..(((...(((((((((..............)))))))))...)))))).))))))).))))). ( -21.44, z-score = -2.36, R) >droYak2.chr3R 16933139 90 - 28832112 CUUCAUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCCC .........(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).))))). ( -25.84, z-score = -3.96, R) >droEre2.scaffold_4770 8606760 90 - 17746568 CUUCAUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCCU ........((((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).)))))) ( -26.74, z-score = -4.37, R) >droAna3.scaffold_13340 16306896 90 - 23697760 CUUCAUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUCGCCUC .........(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).))))). ( -25.14, z-score = -4.28, R) >dp4.chr2 17475028 90 + 30794189 CUUCAUUAAGGGCACAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUACUUUUAUUUGGCCC .........((((..(((((((((((..(((...(((((((((..............)))))))))...))))))))))))))...)))) ( -25.74, z-score = -4.20, R) >droPer1.super_0 11322925 90 + 11822988 CUUCAUUAAGGGCACAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUACUUUUAUUUGGCCC .........((((..(((((((((((..(((...(((((((((..............)))))))))...))))))))))))))...)))) ( -25.74, z-score = -4.20, R) >droVir3.scaffold_13047 13447153 89 - 19223366 CUUCAUUAAGAGCGCAUAAAAGUAAACAAGCUAAAAGUGUGGGAAUUUCACACAUAAUUGGCACUUGAAGUUUU-AUUUUUAUUUGCCAU .........(.(((.(((((((((((...(((((..(((((.(.....).)))))..)))))((.....)))))-)))))))).)))).. ( -18.90, z-score = -1.78, R) >droMoj3.scaffold_6259 6555 89 + 16918 CUUCAUUAAGAGCACAUAAAAGUAAACAAGCUAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUU-AUUUUUAUUUGCCAC .........(.(((.(((((((((((...(((..(((((((((..............)))))))))..))))))-)))))))).)))).. ( -20.24, z-score = -3.13, R) >droGri2.scaffold_14906 3032647 88 - 14172833 CUUCAUUAAGAGCGCAUAAAAGUAAACAAGCUAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUU-AUUUUUAUUUGCCC- ...........(((.(((((((((((...(((..(((((((((..............)))))))))..))))))-)))))))).)))..- ( -19.14, z-score = -2.27, R) >consensus CUUCAUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCCC ...........(((.((((((((....((((...(((((((..((((........)))))))))))...))))..)))))))).)))... (-15.88 = -15.82 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:20 2011