| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,488,092 – 12,488,149 |
| Length | 57 |
| Max. P | 0.800294 |
| Location | 12,488,092 – 12,488,149 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 71.27 |
| Shannon entropy | 0.53006 |
| G+C content | 0.49140 |
| Mean single sequence MFE | -15.68 |
| Consensus MFE | -8.87 |
| Energy contribution | -10.48 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800294 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 12488092 57 + 27905053 AGGAACCCUUUUUGGAGGGAAAAA-UGGCCAAAAGGCGAGAAGAGCCAUC---GGUUGGCC .....(((((....))))).....-.((((((..(((.......)))...---..)))))) ( -19.30, z-score = -1.71, R) >droEre2.scaffold_4770 8603117 60 - 17746568 GGAAACCCUUUUUGGAGGGAAAAA-CUGCCGAAAGGCUGGAAAAGCCAUCAUCGAUUGGCC .....(((((....))))).....-(.(((....))).).....((((........)))). ( -19.60, z-score = -1.87, R) >droYak2.chr3R 16929454 57 - 28832112 AGAAACCCUUUUCGGAGGGAAAAA-CUGCCAAAAGGCGGGAAGAGCCAUC---GAUUGGCC .....(((((....))))).....-(((((....))))).....((((..---...)))). ( -19.80, z-score = -1.86, R) >droSec1.super_12 464085 56 - 2123299 -GGAACCCUUUUUGGAGGGAAAAA-UGGCCAAAAGGCGGGAAGAGCCAUC---GAUUGGAC -....(((((....))))).....-..(((....)))........(((..---...))).. ( -13.10, z-score = -0.19, R) >droSim1.chr3R 18534068 58 - 27517382 AGGAACCCUUUUUGGAGGGAAAAAAUGGCCAAAAGGCGGGAAGAGCCAUC---GAUUGGCC .....(((((....))))).......((((((..(..((......))..)---..)))))) ( -18.50, z-score = -1.33, R) >droMoj3.scaffold_6540 17962775 61 - 34148556 AGAAACCCUUUAUUGCCAUGAGGCUCGCACACAUACAAACAAAAUACGAAAUCAAUACAAA ..............(((....)))..................................... ( -3.80, z-score = -0.14, R) >consensus AGAAACCCUUUUUGGAGGGAAAAA_CGGCCAAAAGGCGGGAAGAGCCAUC___GAUUGGCC .....(((((....)))))........(((....))).......((((........)))). ( -8.87 = -10.48 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:17 2011