| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,463,161 – 12,463,253 |
| Length | 92 |
| Max. P | 0.552241 |
| Location | 12,463,161 – 12,463,253 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 68.46 |
| Shannon entropy | 0.58236 |
| G+C content | 0.42994 |
| Mean single sequence MFE | -13.87 |
| Consensus MFE | -6.10 |
| Energy contribution | -6.88 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12463161 92 + 27905053 ----CAUCUACAUACCCACAUACACACACUCAGAAAAAAACGCAUGCAGAAA-ACUGCCUGCUAAAUUUGCUUUUGCAUC-GACAGCUUCUCCCAAAA ----...........................((((......(((.((((...-.)))).)))......(((....)))..-......))))....... ( -12.30, z-score = -1.65, R) >droSec1.super_12 438874 90 - 2123299 ----CAUCUACAUACCCAC--ACACACACUCAGAAAAAAACGCAUGCAGAAA-ACUGCCUGCUAAAUUUGCUUUUGCAUC-GACAGCUUCUCCCAAAA ----...............--..........((((......(((.((((...-.)))).)))......(((....)))..-......))))....... ( -12.30, z-score = -1.56, R) >droYak2.chr3R 16903695 90 - 28832112 ----CAUCUACAUACACAA--ACACACACUCAGAAAAAAACGCAUGCAGAAA-ACUGCCUGCUGAAUUUGCUUUUGCAUC-GACAGCUUCUCCCAAAA ----...............--..........((((..........((((...-.))))..((((....(((....)))..-..))))))))....... ( -13.40, z-score = -1.29, R) >droEre2.scaffold_4770 8575026 88 - 17746568 ----CAUCUUCAUACACAC----ACACACUCAGAAAAAAACGCAUGCAGAAA-ACUGCCUGUGGAAUUUGCUUUUGCAUC-GACAGCUUCUCCCUAAA ----...............----........((((..........((((...-.))))((((.((...(((....)))))-.)))).))))....... ( -13.20, z-score = -0.55, R) >droAna3.scaffold_13340 16280323 95 - 23697760 UGUACACCCGCCCACACACA-ACACACAGACUGAAACAUACGCAUGCAGACA-UCUGACUGCCGGAUUUGCAUUAGCAUA-GACCACGCUUUAGUUUG ....................-.....(((((((((.(....(((..(((...-.)))..))).((...(((....)))..-..))..).))))))))) ( -18.20, z-score = -1.72, R) >droVir3.scaffold_13047 13872555 77 + 19223366 ----------------CAU-----CUUCAUAAAAAACACACACAGUCAUAAAGACUCCUCGCCGGAUUGGCUUUAACCUUUGGCAGAGUGUCAUCUGA ----------------...-----...............((((((((.....))))....((((((..((......))))))))...))))....... ( -13.80, z-score = -0.45, R) >consensus ____CAUCUACAUACACAC__ACACACACUCAGAAAAAAACGCAUGCAGAAA_ACUGCCUGCUGAAUUUGCUUUUGCAUC_GACAGCUUCUCCCAAAA .........................................(((.((((.....)))).)))......(((....))).................... ( -6.10 = -6.88 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:16 2011