| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,458,623 – 12,458,724 |
| Length | 101 |
| Max. P | 0.677137 |
| Location | 12,458,623 – 12,458,724 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.90 |
| Shannon entropy | 0.25044 |
| G+C content | 0.53739 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -21.59 |
| Energy contribution | -21.62 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12458623 101 + 27905053 GCUCGGCACGCACUGAAAGAUAGCGCUGGCGGCAGACCCGAUGGGACUGGGAA------------ACCAAUUAAAUCACUUGCCUGCUGCCCCAGCGAAUGCUACAAACACAU ((((((......)))).......((((((.(((((.(((...)))..(((...------------.))).................)))))))))))...))........... ( -33.00, z-score = -2.11, R) >droAna3.scaffold_13340 16276129 112 - 23697760 GCUCGGCACGCACUGAGAUAAAUAGCUGGAGGCGGCUCCGGAGAUACUGUAAACAAUGACAUAUAACCAAUUAAGUCGCUUGCCAGCUGCCCCAGCGAAUGCU-UAAACACUA .(((((......))))).......(((((.(((((((.(((.....)))....(((((((.((........)).)))).)))..)))))))))))).......-......... ( -31.40, z-score = -1.29, R) >droEre2.scaffold_4770 8570538 100 - 17746568 GCUCGGCACGCACUGAAAGAUAUCGCUGGCGGCAGAUCCUAAGAGACUGGGAA------------ACCAAUUAAAUCGCUUGCCUGCUGCCC-AGCGAAUGCUACAAACACAU ((((((......))))......(((((((((((((....((((.((.(((...------------.)))......)).)))).)))))).))-)))))..))........... ( -31.80, z-score = -2.36, R) >droYak2.chr3R 16899189 100 - 28832112 GCUCGGCACGCACUGAAAGAUAACGCUGGCGGCAGUUCCUCAGAGACUGGGAA------------ACCAAUUAAAUCGCUUGCCUGCUGCCC-AGCGACUGCUACAAACACAU ((((((......)))).......((((((((((((.......((...(((...------------.)))......))......)))))).))-))))...))........... ( -30.02, z-score = -1.41, R) >droSec1.super_12 434416 101 - 2123299 GCUCGGCACGCACUGAAAGAUAGCGCUGGCGGCAGACCCGAUGGGACUGGGAA------------ACCAAUUAAAUCGCUUGUCUGCUGCCCCAGCGAAUGCUACAAACACAU ((((((......)))).......((((((((((((((.((((..((.(((...------------.))).))..))))...))))))))))..))))...))........... ( -38.80, z-score = -3.47, R) >droSim1.chr3R 18508943 101 - 27517382 GCUCGGCACGCACUGAAAGAUAGCGCUGGCGGCAGACCCGAUGGGACUGGGAA------------ACCAAUUAAAUCGCUUGCCUGCUGCCCCAGCGAAUGCUACAAACACAU ((((((......)))).......((((((.(((((...((((..((.(((...------------.))).))..))))........)))))))))))...))........... ( -34.20, z-score = -2.01, R) >consensus GCUCGGCACGCACUGAAAGAUAGCGCUGGCGGCAGACCCGAAGAGACUGGGAA____________ACCAAUUAAAUCGCUUGCCUGCUGCCCCAGCGAAUGCUACAAACACAU ((((((......)))).......((((((.(((((.((....))...(((................))).................)))))))))))...))........... (-21.59 = -21.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:15 2011