| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,431,035 – 12,431,133 |
| Length | 98 |
| Max. P | 0.852363 |
| Location | 12,431,035 – 12,431,133 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.55 |
| Shannon entropy | 0.50504 |
| G+C content | 0.44761 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -14.87 |
| Energy contribution | -15.86 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12431035 98 - 27905053 ------GGCAGC-GAAAAGGGCACGAGCACGUGUGCGUGUCU---GGUGUGCCCAAGAUAGAGACCAC------ACCGCCGGAUUAAAUAGAGUCAUUUGAGCUAUUAAAUUUA ------(((...-.....(((((((.((....)).)))))))---((((((..(........)..)))------))))))(((((.(((((..((....)).))))).))))). ( -30.30, z-score = -1.87, R) >droSim1.chr3R 18481181 98 + 27517382 ------GGCAGC-GAAAAGGGCACGAGCACGUGUGCGUGUCU---GGUGUGCCCAAGAUAGAGACCAC------ACCGCCGGAUUAAAUAGAGUCAUUUGAGCCAUUAAAUUUA ------(((...-.....(((((((.((....)).)))))))---((((((..(........)..)))------))))))((.((((((......)))))).)).......... ( -29.60, z-score = -1.69, R) >droSec1.super_12 405799 98 + 2123299 ------GGCAGC-GAAAAGGGCACGAGCACGUGUGCGUGUCU---GGUGUGCCCAAGAUAGAGACCAC------ACCGCCGGAUUAAAUAGAGUCAUUUGAGCCAUUAAAUUUA ------(((...-.....(((((((.((....)).)))))))---((((((..(........)..)))------))))))((.((((((......)))))).)).......... ( -29.60, z-score = -1.69, R) >droYak2.chr3R 16870532 104 + 28832112 ------GGCAGC-AAAAAGGGCACGGGCACGUGUGCGUGUCU---GGUGUGCCCAAGAUAGAGACCACCACCGUGCCGCCGGAUUAAAUAGAGUCAUUUGAGCCAUUAAAUUUA ------(((..(-.....)((((((((((((....))))).(---((((..(.(......).)..)))))))))))))))((.((((((......)))))).)).......... ( -34.60, z-score = -1.59, R) >droEre2.scaffold_4770 8540093 99 + 17746568 ------GGCAGCAAAAAAGGGCACCGGCACGUGUGCGUGUCU---GGUGUGCCCAAGAUAGAGACCAC------ACCGCUGGAUAAAAUAGAGUCAUUUGAGCCAUUAAAUUUA ------(((..((((...(((((((((((((....)))).))---)))..))))..........(((.------.....)))..............)))).))).......... ( -28.50, z-score = -0.99, R) >droAna3.scaffold_13340 16240090 92 + 23697760 -------UUUUUUUUAAAGGGCUCUGGCACGUGUGCGUGUAU---GAUGUGCCUAAGAUUUAGA----------GCUGU--GUCUAAAUAGAGUCAUUUGAGCUUUUAAAUUUA -------.....((((((.((((((((((((((((....)))---.)))))))....(((((((----------.....--.))))))))))))).))))))............ ( -24.80, z-score = -2.18, R) >droWil1.scaffold_181108 114990 114 + 4707319 AACUUUAAAAAGGGCCUAAGCCAUAAGCAUGCAAGUUUGUCUAUGGCUUAGUGUUAGAUUGAAUUGAGUAUUUUUUUAUAAGAUUAAAUAGAGUCAUUAGUACUAUUAAAACUA ...(((((....(((((((((((((..((........))..)))))))))).)))...)))))...((((((.((((((........)))))).....)))))).......... ( -24.20, z-score = -1.21, R) >consensus ______GGCAGC_GAAAAGGGCACGAGCACGUGUGCGUGUCU___GGUGUGCCCAAGAUAGAGACCAC______ACCGCCGGAUUAAAUAGAGUCAUUUGAGCCAUUAAAUUUA ......(((.........(((((((.(((((....))))).......)))))))...........................((((......))))......))).......... (-14.87 = -15.86 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:14 2011