| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,429,921 – 12,430,011 |
| Length | 90 |
| Max. P | 0.563474 |
| Location | 12,429,921 – 12,430,011 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 61.31 |
| Shannon entropy | 0.65083 |
| G+C content | 0.47976 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -8.67 |
| Energy contribution | -8.76 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12429921 90 - 27905053 AAGUGAGUAUGA------AGUAUGCCC-----AGUCCGAAAUGGCCAAAAGCGACCAGUGCGCUUAAUUAAGCCAUGUGG----------AGACCAUUGUCCGCAUUGGUC ...((.(((((.------..))))).)-----).((((..(((((...(((((.......)))))......))))).)))----------)(((((.((....)).))))) ( -23.30, z-score = -1.40, R) >droSim1.chr3R 18480074 91 + 27517382 AAGUGAGUAUGA------AGUAUGCCC----AGUCUGGAAAUGGCCAAAAGCGAGCAGUGCGCUUAAUUAAGCCAUGUGG----------AGACCAUUGUCCGCAUUGGUC ...((.(((((.------..))))).)----)..........((((((..(((..(((((.((((....)))).....(.----------...))))))..))).)))))) ( -21.90, z-score = -0.10, R) >droSec1.super_12 404697 68 + 2123299 --------------------------------AAGUGAGUAUGA-AGUAUGCGACCAGUGCGCUUAAUUAAGCCAUGUGG----------AGACCAUUGUCCGCAUUGGUC --------------------------------......(((((.-..)))))(((((((((((((....)))).(((.(.----------...)))).....))))))))) ( -21.30, z-score = -2.81, R) >droYak2.chr3R 16869346 105 + 28832112 AAGUGAGUAUGA------AGUAUGCCCGAUGAAGUCCGAAAUGGCCAAAAGCGACCAGUACGCUUAAUUAAGCCAUGUGGAGUGGAGUUUAGACCAUUGUCCGCAUUGGUC ...((.(((((.------..))))).)).((((.((((..(((((...(((((.......)))))......)))))......)))).))))(((((.((....)).))))) ( -25.80, z-score = -1.36, R) >droEre2.scaffold_4770 8538984 96 + 17746568 AAGUGAGUAUGAAUGCCCAGUACGCCC-----AGUCCGAAAUGGCCAAAAGCGACCAGUACGCUUAAUUAAGCCAUGUGG----------AGCCCAUUGUCCGCAUUGGUC ........((.(((((.((((..((..-----..((((..(((((...(((((.......)))))......))))).)))----------)))..))))...))))).)). ( -20.80, z-score = 0.00, R) >dp4.chr2 25484615 81 + 30794189 -----------------AAGUGAGUAUAACCCAAAAUAGCCAAAACGACGGCUCUCGACGGUCUUAAUUAAGCCAUG-------------CGACCGUUGUCCACAUUGGUC -----------------.............((((...((((........))))..((((((((..............-------------.))))))))......)))).. ( -18.06, z-score = -0.91, R) >droPer1.super_19 848285 81 + 1869541 -----------------AAGUGAGUAUAACCCAAAAUAGCCAAAACGACGGCUCUCGACGGUCUUAAUUAAGCCAUG-------------CGACCGUUGUCCACAUUGGUC -----------------.............((((...((((........))))..((((((((..............-------------.))))))))......)))).. ( -18.06, z-score = -0.91, R) >consensus AAGUGAGUAUGA______AGUAUGCCC_____AAUCCGAAAUGGCCAAAAGCGACCAGUGCGCUUAAUUAAGCCAUGUGG__________AGACCAUUGUCCGCAUUGGUC ................................................(((((.......)))))..........................(((((.((....)).))))) ( -8.67 = -8.76 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:13 2011