| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,427,421 – 12,427,514 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 12,427,421 – 12,427,514 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 78.65 |
| Shannon entropy | 0.44169 |
| G+C content | 0.46571 |
| Mean single sequence MFE | -20.93 |
| Consensus MFE | -12.92 |
| Energy contribution | -13.98 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 12427421 93 + 27905053 CCAUAAAUUAGGCCGCACACAAAGCGCUCCAAAAUUAUUCUGCUGCAAUGGAAUGACCAAUGCCAAAAUGGACACGCAAAGUGGCCAAA-CGAC ..........((((((.......(((.((((.............(((.(((.....))).))).....))))..)))...))))))...-.... ( -19.77, z-score = -0.59, R) >droAna3.scaffold_13340 16236578 93 - 23697760 CCAUAAAUUAGGCCGCUAACAAAGCGGCUCAAAAUUAUUCUGGUGCAAUGGAGUGGCCAAUGCCAAAAUCAUCGAGCCAAGUGGCCAGAGCCA- .......((..((((((.....))))))..))........((((.(.((((..((((....))))...)))).).))))..((((....))))- ( -27.80, z-score = -1.16, R) >droEre2.scaffold_4770 8536512 93 - 17746568 CCAUAAAUUAGGCCGCACACAAAGCGCUCCAAAAUUAUUCUGCUGCAAUGGAAUGACCAAUGCCAAAAUCGACACGCAAAGUGGCCAAA-CAAC ..........((((((......((((..............))))(((.(((.....))).))).................))))))...-.... ( -19.34, z-score = -1.08, R) >droYak2.chr3R 16866807 93 - 28832112 CCAUAAAUUAGGCCGCACACAAAGCGCUCCAAAAUUAUUCUGCUGCAAUGGAAUGACCAAUGCCAAAAUCGACACGCAAAGUGGCCAAA-CGAC ..........((((((......((((..............))))(((.(((.....))).))).................))))))...-.... ( -19.34, z-score = -0.92, R) >droSec1.super_12 402273 93 - 2123299 CCAUAAAUUAGGCCGCACACAAAGCGCUCCAAAAUUAUUCUGCUGCAAUGGAAUGACCAAUGCCAAAAUGGACACGCAAAGUGGCCAAA-CGAC ..........((((((.......(((.((((.............(((.(((.....))).))).....))))..)))...))))))...-.... ( -19.77, z-score = -0.59, R) >droSim1.chr3R 18477586 93 - 27517382 CCAUAAAUUAGGCCGCACACAAAGCGCUCCAAAAUUAUUCUGCUGCAAUGGAAUGACCAAUGCCAAAAUGGACACGCAAAGUGGCCAAA-CGAC ..........((((((.......(((.((((.............(((.(((.....))).))).....))))..)))...))))))...-.... ( -19.77, z-score = -0.59, R) >droVir3.scaffold_13047 13847373 80 + 19223366 ---CCAGUUAGUCAGUCGACUGGGCCAGUCAUAGACAUG--GAUAGCUUCCAGUCACCA--GACAAGACAUAC-CAUAAAUUAGGCAC------ ---((((((........))))))(((.(((...(((.((--((.....)))))))....--)))..(......-)........)))..------ ( -20.70, z-score = -2.70, R) >consensus CCAUAAAUUAGGCCGCACACAAAGCGCUCCAAAAUUAUUCUGCUGCAAUGGAAUGACCAAUGCCAAAAUCGACACGCAAAGUGGCCAAA_CGAC ..........((((((......((((..............))))(((.(((.....))).))).................))))))........ (-12.92 = -13.98 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:12 2011