| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,419,370 – 12,419,516 |
| Length | 146 |
| Max. P | 0.990062 |
| Location | 12,419,370 – 12,419,516 |
|---|---|
| Length | 146 |
| Sequences | 4 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 72.77 |
| Shannon entropy | 0.44370 |
| G+C content | 0.30388 |
| Mean single sequence MFE | -31.76 |
| Consensus MFE | -18.64 |
| Energy contribution | -20.45 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.990062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12419370 146 - 27905053 CAUUAAA-AAAAACGUUGAACAAACACGAUAUGUGAUUAAUAAAAAUGGGCGAUUAAUUGGAAGUUAUUCUAAUUAAUUGUUAU-UCAGAGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACAACUCGGUCAAUAUCAUAAUUUAU .......-......(((.....)))..(((((.(((((..........(((((((((((((((....)))))))))))))))..-.....(((((((((((........))))))))))).........))))))))))......... ( -36.80, z-score = -5.06, R) >droAna3.scaffold_13340 21888340 143 + 23697760 UGGUGAAAAAAAAAACUAA---AACAUAGCACACGA--AAUAUUAAUGGGCAAAUAAGUUGAAGCAGUUUUAAUUGAUUUUGGUCUUUGCGGUUUGGGCCACAAGCUGGCGAAUCUAUAAAUGCAAUGCGCGCUCUAUUAACAAUUUU ((((..........)))).---............((--(((.(((((((((......((....)).((....(((((((((((..(((((((((((.....)))))).))))).))).)))).))))..)))).)))))))..))))) ( -21.90, z-score = 2.27, R) >droSec1.super_12 394301 147 + 2123299 CAUUAAAUAAAAACGUUGAACGAACACGAUAGGUGAUUAAUAAAAAUUGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUUU-UCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAAGAACUCGGUCAAUAUCAUAAUUUAU ..............(((((.(((........(.(((............(((((((((((((........)))))))))))))..-))).)(((((((((((........))))))))))).......))).)))))............ ( -33.84, z-score = -3.33, R) >droSim1.chr3R 18469567 147 + 27517382 CAUUAAAUAAAAACGUUGAACGAACACGAUAGGUGAUUAAUAUAAAUAGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUAU-UCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACAACUCGGUCAAUAUCAUAAUUUAU ...(((((......((((((....(((.....))).............(((((((((((((........))))))))))))).)-)))))(((((((((((........)))))))))))......................))))). ( -34.50, z-score = -3.78, R) >consensus CAUUAAAUAAAAACGUUGAACGAACACGAUAGGUGAUUAAUAAAAAUGGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUAU_UCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACAACUCGGUCAAUAUCAUAAUUUAU ..............(((((.....(((.....))).............(((((((((((((((....)))))))))))))))...)))))(((((((((((........)))))))))))............................ (-18.64 = -20.45 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:10 2011