Locus 10241

Sequence ID dm3.chr3R
Location 12,413,000 – 12,413,051
Length 51
Max. P 0.965713
window14081

overview

Window 1

Location 12,413,000 – 12,413,051
Length 51
Sequences 6
Columns 53
Reading direction reverse
Mean pairwise identity 79.35
Shannon entropy 0.39455
G+C content 0.50000
Mean single sequence MFE -10.30
Consensus MFE -7.43
Energy contribution -7.98
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -1.94
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.76
SVM RNA-class probability 0.965713
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12413000 51 - 27905053
CAACUGCGGGGUCUCUCUCUUUGU--UGAUUCCCAUCCCGCCACUUUACCACU
.....(((((((.....((.....--.)).....)))))))............ ( -11.20, z-score =  -2.20, R)
>droSim1.chr3R 18463129 51 + 27517382
CAACUGCGGGGUCUCUCUCUUUGU--UGAUUCCCAUCCCGCCACUUUACCACU
.....(((((((.....((.....--.)).....)))))))............ ( -11.20, z-score =  -2.20, R)
>droSec1.super_12 387930 51 + 2123299
CAACUGCGGGGUCUCUCUCUUUGU--UGAUUCCCAUCCCGCCACUUUACCACU
.....(((((((.....((.....--.)).....)))))))............ ( -11.20, z-score =  -2.20, R)
>droYak2.chr3R 16852071 51 + 28832112
CAACUGCGGGGUCUCCUUCUUUGU--UGAUUCCCAUCCCGCCACUUUACCGCU
.....(((((((.....((.....--.)).....)))))))............ ( -11.90, z-score =  -1.96, R)
>droEre2.scaffold_4770 8522262 51 + 17746568
CAACUGCGGGGUCUCUCUCUUUGU--UGAUUCCCAUCCCGCCACUUUACCUCU
.....(((((((.....((.....--.)).....)))))))............ ( -11.20, z-score =  -2.36, R)
>droGri2.scaffold_14830 145311 51 + 6267026
--UCUGCCUAUUUUAACUAUUUAUCGUAAACUGCAUAGUUCGAAUAUCACGCU
--...((.(((((.((((((.((........)).)))))).)))))....)). (  -5.10, z-score =  -0.75, R)
>consensus
CAACUGCGGGGUCUCUCUCUUUGU__UGAUUCCCAUCCCGCCACUUUACCACU
.....(((((((.....((........)).....)))))))............ ( -7.43 =  -7.98 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:09 2011