| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,383,001 – 12,383,066 |
| Length | 65 |
| Max. P | 0.874723 |
| Location | 12,383,001 – 12,383,066 |
|---|---|
| Length | 65 |
| Sequences | 9 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 66.71 |
| Shannon entropy | 0.66870 |
| G+C content | 0.39822 |
| Mean single sequence MFE | -13.56 |
| Consensus MFE | -6.73 |
| Energy contribution | -6.89 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12383001 65 + 27905053 ------UAUGUGU-UUAUGUAUUAUGCUGCUCAACCAGU-----GCGCAAACAUUUGCGCAUUUUGCCCAUUUUCAC ------...(((.-..(((......((((......))))-----((((((....))))))........)))...))) ( -13.50, z-score = -0.72, R) >droSim1.chr3R 18433165 65 - 27517382 ------UCUGUGU-UUAUGUAUUAUGCUGCUCAACCAGU-----GCGCAAACAUUUGCGCAUUUUGCCCAUUUUCAC ------...(((.-..(((......((((......))))-----((((((....))))))........)))...))) ( -13.50, z-score = -0.97, R) >droSec1.super_12 358394 65 - 2123299 ------UCUGUGU-UUAUGUAUUAUGCUGCUCAACCAGU-----GCGCAAACAUUUGCGCAUUUUGCCCAUUUUCAC ------...(((.-..(((......((((......))))-----((((((....))))))........)))...))) ( -13.50, z-score = -0.97, R) >droYak2.chr3R 16822297 65 - 28832112 ------UCCGUGU-UUAUGUAUUAUGCUGCUCAACCAGU-----GCGCAAACAUUUGCGCAUUUUGCCCAUUUUCAC ------...(((.-..(((......((((......))))-----((((((....))))))........)))...))) ( -13.80, z-score = -1.32, R) >droEre2.scaffold_4770 8492232 54 - 17746568 ------UCCGUGU-UUAUGUAUUAUGCU----------------GCGCAAACACUUGCGCAUUUUGCCCAUUUUCAC ------...(((.-..(((........(----------------((((((....))))))).......)))...))) ( -11.56, z-score = -1.64, R) >droAna3.scaffold_13340 16194259 71 - 23697760 UAUGUGUAUCUAC-AUAUAUAUUAUGCUGCUCAACCAGU-----GUGCAAACAUUUGCGCAUUUUGCCCAUUUUCAC (((((((....))-)))))........((..(((..(((-----((((((....))))))))))))..))....... ( -13.70, z-score = -0.99, R) >dp4.chr2 25436899 77 - 30794189 UUUGUGUGCGUAUAUUGUAUAUUAUGUUGCUUCCUCAACCAAAGGCGCAAACAUUUGCGCAUUUUGCCAACAUUCAU ...(((((((.....))))))).((((((..........(((((((((((....)))))).))))).)))))).... ( -16.30, z-score = -0.66, R) >droPer1.super_19 798096 77 - 1869541 UUUGUGUGCGUAUAUUGUAUAUUAUGUUGCUUCCUCAACCAAAGGCGCAAACAUUUGCGCAUUUUGCCAACAUUCAU ...(((((((.....))))))).((((((..........(((((((((((....)))))).))))).)))))).... ( -16.30, z-score = -0.66, R) >droVir3.scaffold_13047 13804687 61 + 19223366 -------AAAUAGUCUGAUUAUUGUACAGCACACGCAUA---GAGAGUAAGCCAAAGAGUGGCAAAUUCAU------ -------.....(((((((....)).))).)).......---..((((..((((.....))))..))))..------ ( -9.90, z-score = -0.80, R) >consensus ______UCCGUGU_UUAUGUAUUAUGCUGCUCAACCAGU_____GCGCAAACAUUUGCGCAUUUUGCCCAUUUUCAC ............................................((((((....))))))................. ( -6.73 = -6.89 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:08 2011