| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,652,962 – 7,653,052 |
| Length | 90 |
| Max. P | 0.690838 |
| Location | 7,652,962 – 7,653,052 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.35158 |
| G+C content | 0.46248 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -17.13 |
| Energy contribution | -17.37 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7652962 90 + 23011544 -AACAAAAUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCUCCUUUC--UCUUCCUCUCAUCCCAUUUCACUUUCAUUGCGU -.((..((((((((((.....(..((((((.(((....)))))))(((((........--....)))))))..).....))))))))))..)) ( -20.10, z-score = -1.67, R) >droSim1.chr2L 7450318 90 + 22036055 -AAGAAAGUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCUCCUUUC--UCUUCCUCUCACCCCAUUUCACUUUCAUUGCGU -..((((((((((..(((........((((.(((....)))))))(((((........--....))))))))....))))))))))....... ( -22.30, z-score = -1.69, R) >droSec1.super_3 3166979 90 + 7220098 -AAGAAAGUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCUCCUUUC--UCUUCCUCUCACCCCAUUUCACUUUCAUUGCGU -..((((((((((..(((........((((.(((....)))))))(((((........--....))))))))....))))))))))....... ( -22.30, z-score = -1.69, R) >droYak2.chr2L 17083951 90 - 22324452 -AAGAGAGUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCGUAUUUC--UCUUCCUCUCACCCCAUUUCACUUUCAUUGCGU -..((((((((((..(((........((((.(((....)))))))(((((........--....))))))))....))))))))))....... ( -22.40, z-score = -1.25, R) >droEre2.scaffold_4929 16573333 91 + 26641161 -AAGAUAGUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCGUUCUUU-CUCUUCCUCUCGCCCCAUUUCACUUUCAUUGCGU -..(.(((((((((((.....(((.....))).(((((..(((..(((((........-.....))))).))).))))))))))))))))).. ( -23.02, z-score = -1.77, R) >droAna3.scaffold_12916 15597273 93 + 16180835 GAGGAAAGUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCUUCUUCUGUCCUUCCUCUCACCCCAUUUCACUCUCAUUGCGU (((...(((((((..(((........((((.(((....)))))))(((((...(....).....))))))))....))))))))))....... ( -18.70, z-score = 0.52, R) >dp4.chr4_group3 1548516 86 + 11692001 -GUGGUGGAGAAAGUGUGCUUGUUGGUGGUGCCUCCUGGUG-CUGGUGGGUGCCUCCC----UGCCACACGUAC-AUUUCACUUUCAUUGCGU -(..((((((.((((((((.(((.(((((..((....))..-))...(((.....)))----.)))))).))))-))))...))))))..).. ( -33.00, z-score = -1.60, R) >consensus _AAGAAAGUGAAAGUGUGUUCGUGUGUGGCAUAAAAUGUUGGCCAAGAGGCUCCUUUC__UCUUCCUCUCACCCCAUUUCACUUUCAUUGCGU ......((((((((((.......(((((((.(((....)))))))(((((..............)))))))).......)))))))))).... (-17.13 = -17.37 + 0.23)
| Location | 7,652,962 – 7,653,052 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.35158 |
| G+C content | 0.46248 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -15.78 |
| Energy contribution | -16.87 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7652962 90 - 23011544 ACGCAAUGAAAGUGAAAUGGGAUGAGAGGAAGA--GAAAGGAGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCAUUUUGUU- (((.((((((((((...(((.((((((((..((--((........))))..))....)))))).)))(....)....)))))))))).))).- ( -22.90, z-score = -2.13, R) >droSim1.chr2L 7450318 90 - 22036055 ACGCAAUGAAAGUGAAAUGGGGUGAGAGGAAGA--GAAAGGAGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCACUUUCUU- .......(((((((((((((.(((.(.((...(--(((.(..(((....)))...).))))...)).).)))...).)).))))))))))..- ( -23.20, z-score = -1.64, R) >droSec1.super_3 3166979 90 - 7220098 ACGCAAUGAAAGUGAAAUGGGGUGAGAGGAAGA--GAAAGGAGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCACUUUCUU- .......(((((((((((((.(((.(.((...(--(((.(..(((....)))...).))))...)).).)))...).)).))))))))))..- ( -23.20, z-score = -1.64, R) >droYak2.chr2L 17083951 90 + 22324452 ACGCAAUGAAAGUGAAAUGGGGUGAGAGGAAGA--GAAAUACGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCACUCUCUU- ......((((((((.....((.(((((((...(--....)...))))))).)).....((..((.....))..))..)))))))).......- ( -22.90, z-score = -2.08, R) >droEre2.scaffold_4929 16573333 91 - 26641161 ACGCAAUGAAAGUGAAAUGGGGCGAGAGGAAGAG-AAAGAACGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCACUAUCUU- ......((((((((.....((.(((((((....(-......).))))))).)).....((..((.....))..))..)))))))).......- ( -23.30, z-score = -2.57, R) >droAna3.scaffold_12916 15597273 93 - 16180835 ACGCAAUGAGAGUGAAAUGGGGUGAGAGGAAGGACAGAAGAAGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCACUUUCCUC .......((((((((((((((.(((((((..............))))))).)).....((..((.....))..))..)).))))))))))... ( -22.64, z-score = -0.86, R) >dp4.chr4_group3 1548516 86 - 11692001 ACGCAAUGAAAGUGAAAU-GUACGUGUGGCA----GGGAGGCACCCACCAG-CACCAGGAGGCACCACCAACAAGCACACUUUCUCCACCAC- .......(((((((....-....((((((..----(((.....))).))).-)))..((.(....).))........)))))))........- ( -20.10, z-score = 0.64, R) >consensus ACGCAAUGAAAGUGAAAUGGGGUGAGAGGAAGA__GAAAGGAGCCUCUUGGCCAACAUUUUAUGCCACACACGAACACACUUUCACUUUCUU_ ......((((((((.....((.(((((((..............))))))).)).....((..((.....))..))..))))))))........ (-15.78 = -16.87 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:07 2011