| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,366,165 – 12,366,222 |
| Length | 57 |
| Max. P | 0.628890 |
| Location | 12,366,165 – 12,366,222 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Shannon entropy | 0.47847 |
| G+C content | 0.39176 |
| Mean single sequence MFE | -12.03 |
| Consensus MFE | -6.47 |
| Energy contribution | -6.08 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12366165 57 - 27905053 AUAAUUGCCACAACGAGGCAGUAAACUCGUUUUGUAAUGGGCUUUAUACUC---GAACUG------ .............((((...(((((((((((....)))))).))))).)))---).....------ ( -11.60, z-score = -1.28, R) >droSim1.chr3R 18416200 57 + 27517382 AUAAUUGCCACAACGAGGCAGUAAACUCGUUUUGUAAUGGGCUUUAUACUC---GAACUC------ .............((((...(((((((((((....)))))).))))).)))---).....------ ( -11.60, z-score = -1.37, R) >droSec1.super_12 341493 57 + 2123299 AUAAUUGCCACAACGAGGCAGUAAACUCGUUUUGUAAUGGGCUUUAUGCUC---GAAUUC------ ...(((((...((((((........))))))..)))))((((.....))))---......------ ( -14.90, z-score = -2.32, R) >droYak2.chr3R 16804544 56 + 28832112 AUAAUUGCCACAACGAGGCAGUAAACUCGUUUAGGUA-GGUCUUUAUACUC---GAACCG------ ...((((((.......))))))......(((..((((-........)))).---.)))..------ ( -12.70, z-score = -1.67, R) >droEre2.scaffold_4770 8474906 60 + 17746568 AUAAUUGCCACAACGAGGCAGUAAACUCGUUUUGCAAUGGUCUUUAUACUCUUGGAAAUG------ ...(((((...((((((........))))))..)))))......................------ ( -11.80, z-score = -1.26, R) >droAna3.scaffold_13340 16177657 64 + 23697760 AUAAUGACAAUCAUAAGGUCGUAAAACACUCUUG--AUGUUUGCUGGUUUUUGUGAACUUGUUUUG .....(((((((((((((.....((((((....)--.)))))......))))))))..)))))... ( -9.60, z-score = -0.14, R) >consensus AUAAUUGCCACAACGAGGCAGUAAACUCGUUUUGUAAUGGGCUUUAUACUC___GAACUG______ ...((((((.......))))))............................................ ( -6.47 = -6.08 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:06 2011