| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,364,205 – 12,364,310 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 12,364,205 – 12,364,310 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 70.33 |
| Shannon entropy | 0.53135 |
| G+C content | 0.36811 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -10.78 |
| Energy contribution | -11.03 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 12364205 105 + 27905053 ---------UUUACUAAUUCAUUCGAGAAAACAUUCAAGACAUGAGAAUUCAAUUUAUUCAAAGGCGGCAGCAAAGUCAAGCUUUUCCUAGACUGCACAACUGCAGUCAUUCGG ---------.........((((((..(((....)))..)).))))((((...........(((((((((......)))..))))))....(((((((....))))))))))).. ( -20.80, z-score = -1.65, R) >droSim1.chr3R 18414314 100 - 27517382 ---------UUUAUUAAUUCAUUUGAGAAAACAU--GAGACAUGAGAAUUCAAUUUAUUCAAGAGCGGCA---AAGUCAAGCUUUUCCUGGGCUGCACAACUGCAGUCAUUCGG ---------.............(((((....(((--(...))))....)))))......((.(((.(((.---.......))).))).))(((((((....)))))))...... ( -18.00, z-score = 0.36, R) >droYak2.chr3R 16802614 96 - 28832112 ---------UUUACUAAUUUAUUUGGAAAAACAU--GGAAC----GAAUUCAAUUUAUUCAAAAGCAGCA---AAGUCAAGCUUUUCCUAGGCUGCACAACUGCAGUCAUCCGG ---------..............((((.......--(((..----((((.......)))).(((((....---.......))))))))..(((((((....))))))).)))). ( -20.00, z-score = -1.98, R) >droEre2.scaffold_4770 8473024 96 - 17746568 ---------UUUACUAAUUUAUUUGAGAAAACAU--ACGGC----GAAUUCAAUUUAUUCAAAAGCAGCC---AAGUCAAGCUUUUCCCAGGCUGCACAACUGCAGUCAUCCGG ---------.........................--.(((.----((((.......))))((((((....---.......))))))....(((((((....)))))))..))). ( -17.50, z-score = -1.04, R) >droAna3.scaffold_13340 16175995 111 - 23697760 UAAGCGGAAUACCUCAAAAGAUUUUUAAAUCGAUUCUUCUUUAUCAAAAGAAAUCUAUAUUAAAAUAGUA---GUCUUGAACUUUUCAGAGUUUCAACCAAUUUGUCCCAUCGG ...(.(((...........((((....))))((..(((.........((((...((((......))))..---.))))..........)))..))..........))))..... ( -11.91, z-score = 0.80, R) >droSec1.super_12 339606 100 - 2123299 ---------UUUACUAAUUCAUUCGAGAAAACAU--GAGGCAUGAGAAUUCAAUUUAUUCAAAAGCGGCA---AAGUCAAGCUUUUCCUAGGCUGCACAACUGCAGUCAUUCGG ---------..............((((.......--.(((.....((((.......))))((((((....---.......))))))))).(((((((....))))))).)))). ( -19.80, z-score = -0.74, R) >consensus _________UUUACUAAUUCAUUUGAGAAAACAU__GAGACAUGAGAAUUCAAUUUAUUCAAAAGCAGCA___AAGUCAAGCUUUUCCUAGGCUGCACAACUGCAGUCAUUCGG .......................((((.................................(((((((((......)))..))))))....(((((((....))))))).)))). (-10.78 = -11.03 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:05 2011