| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,329,055 – 12,329,159 |
| Length | 104 |
| Max. P | 0.573946 |
| Location | 12,329,055 – 12,329,159 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.60 |
| Shannon entropy | 0.34620 |
| G+C content | 0.42267 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -12.94 |
| Energy contribution | -12.98 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12329055 104 - 27905053 UUCGUUUUCAUUUCGCAGUGUGGCUAUGUUUUCCCUCUCUGCAUGUACGUACAUAUGUACGUGUGUGUGUGUGGUUUGCUUUUGGAAGCAGCCCCGAAAAAAAA-- ....(((((.....((((.(.((..(....)..)).).))))(..(((((((....)))))))..)....(.((.((((((....)))))).))))))))....-- ( -28.10, z-score = -2.07, R) >droSim1.chr3R 18379314 98 + 27517382 UUCGUUUUCGUUUCGCAUUGUGGCUAUGUUUUCCCUCUCUGCAUGU----ACACAUGUAUGUGUGUGUGUGU--UUUGCUUUUGGAAGCAGCCCCGAAAAAAAA-- ..........(((((....(.((((..((((((.......(((..(----((((((....)))))))..)))--.........)))))))))))))))).....-- ( -24.09, z-score = -1.96, R) >droSec1.super_12 304807 99 + 2123299 UUCGUUUUCGUUUCGCAUUGUGGCUAUGUUUUCCCUCUCUGCAUGU----GCACAUGUAUGUGUGUGUGUG--GUUUGCUUUUGGAAGCAGCCCCGAAAAAAAAA- ....((((..(((((....(.((((.............(..((((.----.((((....))))..))))..--)...((((....))))))))))))))..))))- ( -24.40, z-score = -1.27, R) >droEre2.scaffold_4770 8436525 86 + 17746568 UUCGUUUUCGUUUCGCAUUGUA-----------CAUGUACACAUGU----AC-UAUGUGCA----UGUGUGUGGUUUGCCGUUGGAAGCAGCCCCGAAAAAAAGAA .((.((((((...(((((((((-----------(((((((....))----))-.)))))))----.))))).((....))((((....))))..))))))...)). ( -26.40, z-score = -2.23, R) >droYak2.chr3R 16766542 88 + 28832112 UUCGUUUUCGUUUCGCAUUGUA-----------CAUUUACACAUGU----AC-UAUGUGCAUGUGUGUGUGUGGUUUGCUUUAGGAAGCAGCCCCGAAAAAAAA-- ....((((((...........(-----------(((.(((((((((----((-...))))))))))).))))((.((((((....)))))).))))))))....-- ( -28.50, z-score = -3.25, R) >consensus UUCGUUUUCGUUUCGCAUUGUGGCUAUGUUUUCCCUCUCUGCAUGU____ACAUAUGUACGUGUGUGUGUGUGGUUUGCUUUUGGAAGCAGCCCCGAAAAAAAA__ ....((((((....((.......................(((((((......))))))).................(((((....)))))))..))))))...... (-12.94 = -12.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:01 2011