Locus 10233

Sequence ID dm3.chr3R
Location 12,328,368 – 12,328,455
Length 87
Max. P 0.692759
window14070

overview

Window 0

Location 12,328,368 – 12,328,455
Length 87
Sequences 5
Columns 87
Reading direction reverse
Mean pairwise identity 81.02
Shannon entropy 0.32429
G+C content 0.47782
Mean single sequence MFE -24.68
Consensus MFE -16.14
Energy contribution -16.74
Covariance contribution 0.60
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.43
SVM RNA-class probability 0.692759
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12328368 87 - 27905053
GCGGGUUCAUGUUCGAAGCGAGCAAGUUCGAGUUCGUAUCGAACUUAAGAGAGCCAACUAAAAGAGUGGGCUAAGAGUUUAAGGAAC
....((((...(((((.((((((........)))))).)))))((((((..((((.(((.....))).)))).....)))))))))) ( -27.20, z-score =  -2.96, R)
>droSim1.chr3R 18378629 87 + 27517382
GCGAGCUCAUGUUCGAAGCGAGCCGGUUCGAGUUCGAAUCGAACUUAAGAGAGCAAACUAAAAGAGUGGGUGAAGAGUUUGAAGAAC
.(((((((..((((((..(((((((...)).)))))..))))))........((..(((.....)))..))...)))))))...... ( -26.10, z-score =  -2.05, R)
>droSec1.super_12 304115 87 + 2123299
GCGGGCUCAUGUUCGAAGCGAGCCGGUUCGAGUUCGAAUCGAACUUAAGAGAGCAAACUAAAAGAGUGGGUGAAGAGUUUGAAGAAC
.(((((((..((((((..(((((((...)).)))))..))))))........((..(((.....)))..))...)))))))...... ( -25.20, z-score =  -1.60, R)
>droEre2.scaffold_4770 8435835 81 + 17746568
GCAGGUCCGUGUUCGAAUCGCGCCGGUUCGAGUUCGAAUCGAACUUAAGAGAGCAGGCUGGAAGUAAGAGU------UUUGAGGUUC
...(((.((..(((((((((...)))))))))..)).)))((((((.((((..(..((.....))..)..)------))).)))))) ( -21.30, z-score =   0.20, R)
>droYak2.chr3R 16765828 81 + 28832112
GCCGGUCCAUGUUCGAAUCGAGCCGAUUCGAGUUCGAAUCGAACUUAAGAGAGCAAACUAGAAGUAAGAGU------UUUAAGGCAC
((((.(((..((((((.((((((((...)).)))))).))))))....).)).)(((((.........)))------))...))).. ( -23.60, z-score =  -2.47, R)
>consensus
GCGGGUUCAUGUUCGAAGCGAGCCGGUUCGAGUUCGAAUCGAACUUAAGAGAGCAAACUAAAAGAGUGGGU_AAGAGUUUGAGGAAC
((...(((..((((((.((((((........)))))).))))))....))).))................................. (-16.14 = -16.74 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:00 2011