| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,327,511 – 12,327,567 |
| Length | 56 |
| Max. P | 0.997946 |
| Location | 12,327,511 – 12,327,567 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 83.30 |
| Shannon entropy | 0.31313 |
| G+C content | 0.38779 |
| Mean single sequence MFE | -14.33 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.22 |
| SVM RNA-class probability | 0.997946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12327511 56 - 27905053 UCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCA-GGGUCGUAGGAG------- ..(((((((((((((.......)))))))))))))((((.....-))))........------- ( -14.40, z-score = -3.93, R) >droSim1.chr3R 18377788 57 + 27517382 UCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGGGUCGUAGGAG------- ..(((((((((((((.......)))))))))))))((((......))))........------- ( -14.50, z-score = -3.58, R) >droSec1.super_12 303234 57 + 2123299 UCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGGGUCGAAGGAG------- ..(((((((((((((.......))))))))))))).(((.....))).((....)).------- ( -15.10, z-score = -3.78, R) >droEre2.scaffold_4770 8434997 64 + 17746568 UCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGAAUCAGGGGUCGUGGGAG ..(((((((((((((.......))))))))))))).(((...((.((........)).))))). ( -15.70, z-score = -2.79, R) >droYak2.chr3R 16764999 57 + 28832112 UCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAACCAAUCGGGGGUCGUGGGCG------- .((((((((((((((.......))))))))))(((..((....))..)))...))))------- ( -14.80, z-score = -2.62, R) >droAna3.scaffold_13340 16142086 57 + 23697760 --GCCAAUUACAAUUACAUAUCAAUUAUAAUUGGCAGCCAAUCAGGGGUCGCGUAGGAG----- --((((((((.((((.......)))).)))))))).(((.......)))..........----- ( -11.50, z-score = -1.89, R) >consensus UCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGGGUCGUAGGAG_______ ..(((((((((((((.......)))))))))))))............................. (-12.44 = -12.33 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:59 2011