| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,641,742 – 7,641,858 |
| Length | 116 |
| Max. P | 0.519846 |
| Location | 7,641,742 – 7,641,858 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 132 |
| Reading direction | reverse |
| Mean pairwise identity | 70.58 |
| Shannon entropy | 0.51582 |
| G+C content | 0.42476 |
| Mean single sequence MFE | -32.42 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.02 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7641742 116 - 23011544 -----AGUUACUGUGCACUGCUUGACUAGUUUUUAACUGCUUCGAAGCAGUGCC-----------UAGCUGUUAUUUUGUGAACUAAGAGUUUUGAGUGGCGACACCUGGUGGUGGAUUAUUUCCCAUGUAG -----.(((.(((.(((((((((((.((((.....))))..)).))))))))).-----------)))..(((((((...((((.....)))).)))))))))).....((((.(((....))))))).... ( -31.50, z-score = -0.83, R) >droEre2.scaffold_4929 16562113 120 - 26641161 ---------AUUGUGCACUGCUUGACUACUUUUGAACUGCUUGCACGUAGUAUUA--CUUUUGCUUAGCGGCUAAUCUGUAAACUGCUUGACUUGCGUGGCGACACCUGGUGCUGGAGC-UAUCACUUGUAA ---------...(((....((((.(.((((........((..(((.(((((.(((--(....(((....)))......))))))))).)).)..))(((....)))..)))).).))))-...)))...... ( -26.50, z-score = 0.81, R) >droYak2.chr2L 17072682 127 + 22324452 UCUUAUUGGACUUUGCACUGCUUUACUACUUUUGGACUGCUUG---GCAGUUCUA--UUUUCGUUAUGCAGUUAUUUUGUGAACUGCGUGACUAACGUGGCGACACCUGGUGGUGAAAUACAUCUCUUGUAA .....................(((((((((...(((((((...---)))))))..--.....(((((((((((........)))))))))))....(((....)))..))))))))).((((.....)))). ( -36.00, z-score = -3.06, R) >droSec1.super_3 3155797 127 - 7220098 -----AGUUGGUUUGCACUGCUUGACUAAUCUUCCACUGCUUCGAAGCAGUGCCAUAUAUUAGUUUUUGUGAUAUUUUGUGAACUAAGUGUUUUGAGUGGCGCCACCUGGUGGUGGAUGAUUUCUCAUGUUG -----(.((((((..((..((..(((((((....(((((((....)))))))......)))))))...)).......))..)))))).)....((((...(((((((....))))).))....))))..... ( -35.10, z-score = -1.46, R) >droSim1.chr2L 7439120 125 - 22036055 -----AGUUGGUUUGCACUGCUUGACUAAUCUUCCACUGCUUCGAAGCAGUGCCA--UAUUAUUUUAUGUGUUAUUUUGUGAACUAAGUGUUUUGAGUGUCGCCACCUGGUGGUGGAUGAUUUCCCAUGUUG -----(.((((((..((.....((((........(((((((....))))))).((--((......)))).))))...))..)))))).).....(((.(((((((((....))))).)))))))........ ( -33.00, z-score = -1.71, R) >consensus _____AGUUACUUUGCACUGCUUGACUAAUUUUCAACUGCUUCGAAGCAGUGCCA__UAUUAGUUUAGCUGUUAUUUUGUGAACUAAGUGUUUUGAGUGGCGACACCUGGUGGUGGAUGAUUUCCCAUGUAG ...............(((((((............((((((......))))))............................................(((....)))..)))))))................. (-15.74 = -16.02 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:06 2011