| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,279,559 – 12,279,640 |
| Length | 81 |
| Max. P | 0.914341 |
| Location | 12,279,559 – 12,279,640 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 71.44 |
| Shannon entropy | 0.52644 |
| G+C content | 0.37430 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -9.06 |
| Energy contribution | -8.57 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12279559 81 - 27905053 AAAAUACUGAACCACUUGA------CCAGCAUCGAUAGUCCUAUAAAAGUGUCGAUGUUUCGAUAAAA-GGCCACACAGUGGAAUACU ...........(((((((.------((((((((((((.(........).)))))))))).........-)).))...)))))...... ( -17.70, z-score = -2.00, R) >droWil1.scaffold_181130 15850258 87 - 16660200 AUAAU-UAGAAUCAUUUGAAAAUACCGAGAAUAAGUGACACCAGAUGGUUGUCGAUAGAGAGUGCGGUUUUCCGUGUUGUGGAUCACU .....-...(((((((((....(((.........)))....)))))))))...(((..(.((..(((....)))..)).)..)))... ( -16.90, z-score = -0.00, R) >droSim1.chr3R 18334038 82 + 27517382 AAAAUACUGAACCACUUGA------CCAACAUCGAUAGUUCUAUACAAGUAUCGAUGUUUCGAUAAAAGGGCCACACAGUGGAAUACU ...........(((((((.------((((((((((((.((......)).)))))))))).(.......))).))...)))))...... ( -18.70, z-score = -2.46, R) >droSec1.super_12 255579 82 + 2123299 AAAAUACUGAACCACUUGA------CCAAUAUCGAUAGUUCUAUACAAGUGUCGAUGUUUCAAUAAAAGGGCCACACAGUGGAAUACU ...........(((((((.------((((((((((((.((......)).))))))))))..........)).))...)))))...... ( -16.70, z-score = -1.45, R) >droYak2.chr3R 14697253 81 + 28832112 AAAAUACUGAACCUCUUGA------UCAACAUCGAUAGUCCAAAAAUGGUAUCGAUGUUUUAGUAAAA-GGUCACACAAUGGAAUUCU .......(((.(((.(((.------..((((((((((..(((....)))))))))))))....))).)-))))).............. ( -18.30, z-score = -2.43, R) >droEre2.scaffold_4770 11810580 81 - 17746568 AAAAUACUGAACCUCUUGA------CCAACAUCGAUAGUCCUAAAAUGGUAUCGAUGUCUUAGUACAA-GGUCACACAGUGGAAUACU ....(((((....((((((------(..(((((((((..((......)))))))))))....)).)))-)).....)))))....... ( -19.70, z-score = -2.13, R) >consensus AAAAUACUGAACCACUUGA______CCAACAUCGAUAGUCCUAUAAAAGUAUCGAUGUUUCAAUAAAA_GGCCACACAGUGGAAUACU ...........................((((((((((.(........).))))))))))............(((.....)))...... ( -9.06 = -8.57 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:55 2011