| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,272,965 – 12,273,105 |
| Length | 140 |
| Max. P | 0.572218 |
| Location | 12,272,965 – 12,273,105 |
|---|---|
| Length | 140 |
| Sequences | 5 |
| Columns | 142 |
| Reading direction | forward |
| Mean pairwise identity | 92.20 |
| Shannon entropy | 0.13169 |
| G+C content | 0.35420 |
| Mean single sequence MFE | -30.31 |
| Consensus MFE | -23.60 |
| Energy contribution | -24.92 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12272965 140 + 27905053 AUAAUUAACA-CAUCGACCUCUAAUAAUUGUCAUCACCCUGAAAUUCGUUUAUGGGCCC-AAGAAUGUACAAUUAUGUGCACUGAAAUAUAUAAAUGGACUUGAAAAUUACAGACUUCGAUGCUUGCACUAAAAUGUGCCAC ..........-((((((..(((..(((((.(((((.....))..((((((((((.....-.((..((((((....))))))))......))))))))))..))).))))).)))..))))))...((((......))))... ( -29.40, z-score = -2.31, R) >droEre2.scaffold_4770 11804070 140 + 17746568 AUAAUUAACA-CAUCGACCUCUAAUAAUUGUCAUCACCAUGAAAUUCGUUUAUGGGCCC-AAGAAUGUACAAUCAUGGGCACUGAAAUAUAUAAAUGGACUCGUAUAUUGUAGACUUUGAUGCUCGCACUUGAAUGUGCAAC ..........-((((((..(((((((...(((....(((((((.....)))))))((((-(.((........)).))))).................)))...)))....))))..))))))...((((......))))... ( -33.70, z-score = -2.04, R) >droYak2.chr3R 14690533 141 - 28832112 AUAAUUAACAUCAUCGACCUCUAAUAAUUGUCAUCGCCAUGAAAUUCGUUUAUGGGCCC-AAGAAUGUGCAAUCAUGGGCACUGAAAUAUAUAAAUGGACUCGUAUAUUGUAGACUUUGAUGCACGCACUUAAAUGUGCAAC ...........((((((..(((((((...(((....(((((((.....)))))))((((-(.((........)).))))).................)))...)))....))))..))))))...((((......))))... ( -33.00, z-score = -1.33, R) >droSec1.super_12 249054 141 - 2123299 AUAAUUAACA-CAUCGACCUCUAAUAAUUGUAAUCACCCUGAAAUUCGUUUAUGGGCCCCAAGAAUGUACAAUUAUGUGCACUGAAAUAUAUAAAUGGACUCGAAAAUUAUAGAUUUCGAUGCUAGCACUAAAAUGUGCCAC ..........-((((((..((((.(((((....((.....))..((((((((((.......((..((((((....))))))))......))))))))))......)))))))))..))))))...((((......))))... ( -28.82, z-score = -2.28, R) >droSim1.chr3R 18327436 141 - 27517382 AUAAUUAACA-CAUCGACCUCUAAUAAUUGUCAUCACCCUGAAAUUCGUUUAUGGGCCCCAAGAAUGUACAAUUAUGUGCACUGAAAUAUAUAAAUGGACUCGAAAAUUAUAGAUUUCGAUGCUUGCACUAAAAUCUGCCAC ..........-((((((..((((.(((((.((.((.....))..((((((((((.......((..((((((....))))))))......))))))))))...)).)))))))))..))))))...(((........)))... ( -26.62, z-score = -1.74, R) >consensus AUAAUUAACA_CAUCGACCUCUAAUAAUUGUCAUCACCCUGAAAUUCGUUUAUGGGCCC_AAGAAUGUACAAUUAUGUGCACUGAAAUAUAUAAAUGGACUCGAAAAUUAUAGACUUCGAUGCUCGCACUAAAAUGUGCCAC ...........((((((..((((.(((((.((.((.....))..((((((((((.......((..((((((....))))))))......))))))))))...)).)))))))))..))))))...((((......))))... (-23.60 = -24.92 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:53 2011