| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,239,601 – 12,239,696 |
| Length | 95 |
| Max. P | 0.678172 |
| Location | 12,239,601 – 12,239,696 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.91 |
| Shannon entropy | 0.38476 |
| G+C content | 0.49376 |
| Mean single sequence MFE | -21.04 |
| Consensus MFE | -14.43 |
| Energy contribution | -15.05 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12239601 95 - 27905053 -----AACAACAUGGCGUUGUUCCAGUUCCCACUUU-UUCCAAGCACUGGAAGUUGAGU-GGAACCCAUCCACUC-ACACUCGCACUCACUCACACUCAUAGA -----.........(((...(((((((.(.......-......).)))))))(((((((-(((.....)))))))-).)).)))................... ( -22.22, z-score = -1.75, R) >droAna3.scaffold_13340 15590883 84 - 23697760 CCGGCAACAACAUGGCG-GGUUCCGUUUCCCAUUUCGUUCCGGCCACUGGAAACUGAGUCGAAACUCACUCUUUCUGCUCUUUGA------------------ ((((.(((...((((.(-((......)))))))...))))))).....(....).((((.((((.......)))).)))).....------------------ ( -18.70, z-score = 0.40, R) >droSim1.chr3R 18293963 91 + 27517382 -----AACAACAUGGCGUUGUUCCAGUUCCCACUUU-UUCCAUCCACUGGAAGUUGAGU-GGAACCCAUCCACUC-ACUCUCGCAC----UCACACUCAUAGA -----.........(((...(((((((.........-........)))))))..(((((-(((.....)))))))-)....)))..----............. ( -21.63, z-score = -1.99, R) >droSec1.super_12 215573 91 + 2123299 -----AACAACAUGGCGUUGUUCCAGUUCCCACUUU-UUCCAUCCACUGGAAGUUGAGU-GGAACCCAUCCACUC-ACUCUCGCAC----UCACACUCAUAGA -----.........(((...(((((((.........-........)))))))..(((((-(((.....)))))))-)....)))..----............. ( -21.63, z-score = -1.99, R) >consensus _____AACAACAUGGCGUUGUUCCAGUUCCCACUUU_UUCCAUCCACUGGAAGUUGAGU_GGAACCCAUCCACUC_ACUCUCGCAC____UCACACUCAUAGA .....((((((.....))))))...(((((.((((..(((((.....)))))...)))).)))))...................................... (-14.43 = -15.05 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:47 2011