| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,223,987 – 12,224,083 |
| Length | 96 |
| Max. P | 0.616825 |
| Location | 12,223,987 – 12,224,083 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.65 |
| Shannon entropy | 0.55965 |
| G+C content | 0.46687 |
| Mean single sequence MFE | -27.95 |
| Consensus MFE | -7.38 |
| Energy contribution | -6.81 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.59 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12223987 96 - 27905053 CCGUCUGGCAGUGUGUGUACCCGAGUAUCUAA----------GUAUAUGGGUAUCCAAGUAUCAAAGUAUCCAUAUCUAUAGUAUUUGUAGCUCUCCUACUCGCCG ......(((((((.(.((...((((((.((((----------(.((((((((((............)))))))))))).)))))))))..))...).)))).))). ( -22.70, z-score = -1.80, R) >droSim1.chr3R 18277625 96 + 27517382 CCGUCUGGCAGUGUGUGUGCCCGAGUAUCUAA----------GUAUAUGGGUAUUCAAGUAUCAAAGUAUCCAUAUCUAUAGUAUUUGUAGCUCUCCUACUCGCCG ......(((((((.(.(.((.((((((.((((----------(.(((((((((((..........))))))))))))).)))))))))..)).).).)))).))). ( -26.80, z-score = -3.21, R) >droSec1.super_12 199756 96 + 2123299 CCGUCUGGCAGUGUGUGUGCCCGAGUAUCUAA----------GUAUAUGGGUAUCCAAGUAUUAAAGUAUCCAUAUCUAUAGUAUUUGUAGCUCUCCUACUCGCCG ......(((((((.(.(.((.((((((.((((----------(.((((((((((............)))))))))))).)))))))))..)).).).)))).))). ( -26.00, z-score = -2.81, R) >droYak2.chr3R 14639709 106 + 28832112 CCGUCUGCCAGUGUGUGUGCCUAAGUAUCUAAGUAUCUAGGUGUAUAUGGGUAUCCAAGUAUCAAAGUAUCCAUAUCUAUAGUAUUCGUAGCUCUCCUACUCGCCG ..(.((((.((((.(((..((((..(((....)))..))))..)))((((((((............))))))))........)))).))))).............. ( -20.40, z-score = -0.62, R) >droEre2.scaffold_4770 11751855 104 - 17746568 CCGUCUGCCAGUGUGUGUAUAUAAGUAUCUAAGUAUAUGG--GUAUCCAAGUAUCCGAGUAUCAAAGUAUCCAUAUCUGUAGUAUUUGUAGCUCUCCUACUCGCCG ......((.((((.(.(..(((((((((...((.((((((--((((....((((....))))....))))))))))))...)))))))))...).).)))).)).. ( -23.60, z-score = -2.56, R) >droAna3.scaffold_13340 15574332 92 - 23697760 CCGACUGGCAGAGUCCAUGGUCUAUAGCCCUC----------CUUGUUCCACGCCCGCUCUGCCGAGUGGGUGCUUGGGGAGGUGCUGUGGGAUGUGGGCUG---- ...........((((((((..(((((((((((----------((((.....(((((((((....)))))))))..)))))))).)))))))..)))))))).---- ( -48.20, z-score = -3.40, R) >consensus CCGUCUGGCAGUGUGUGUGCCCGAGUAUCUAA__________GUAUAUGGGUAUCCAAGUAUCAAAGUAUCCAUAUCUAUAGUAUUUGUAGCUCUCCUACUCGCCG ....(((...(((((.(((((((.((((..............)))).)))))))....((((....)))).)))))...))).....((((.....))))...... ( -7.38 = -6.81 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:46 2011