| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,634,203 – 7,634,299 |
| Length | 96 |
| Max. P | 0.693665 |
| Location | 7,634,203 – 7,634,299 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 58.37 |
| Shannon entropy | 0.71883 |
| G+C content | 0.39202 |
| Mean single sequence MFE | -20.50 |
| Consensus MFE | -5.97 |
| Energy contribution | -5.05 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7634203 96 - 23011544 -----UUUGCC-AAGAAGGGGAGACGAUAUACCUUAGCAUAAGGGGGUAU--AUCCACAUCACAUUGAAUAAGGAACAUCACAGAUGCCAUCCCCCAGAAAAUG------ -----......-.....((((.((.((((((((((........)))))))--))).................((..((((...)))))).))))))........------ ( -23.10, z-score = -1.46, R) >droYak2.chr2L 17063846 76 + 22324452 -----UUUGCCAAAGAAGGAGACACGGUAUACCCUUAUACGAGAGGGUAU--AUCCACAUCACAUUCCAUGCUGCAAAAAAUU--------------------------- -----(((((((..((((....)..(((((((((((......))))))))--))).........)))..))..))))).....--------------------------- ( -21.00, z-score = -3.74, R) >droSec1.super_3 3147806 94 - 7220098 -----UUUGCC-AAGAAGGAGAUACGA--UACCCUAGUAUGAGAGGGUAU--AUGCACAUCACAUUGAAUAAGGAACAGGACAUAUUCCAUUCCCCAGAAAAUA------ -----((((.(-((....((......(--((((((........)))))))--.......))...))).....((((..(((.....))).)))).)))).....------ ( -16.82, z-score = -0.62, R) >droSim1.chr2L 7431045 96 - 22036055 -----UUUGCC-AAGAAGGAGAUACGAUAUACCCUAGCAUGAGAGGGUAU--AUGCACAUCACAUUGAAUAAGGAACAGGACAGAUUCCAUUCCCCAGAAAAUU------ -----......-.....((.(((..((((((((((........)))))))--)).)..)))...........((((..(((.....))).))))))........------ ( -19.30, z-score = -1.64, R) >droVir3.scaffold_12963 11111313 108 - 20206255 UUAAGUAUGCA-AAUAGGAAGAUAUUGUAUUUAUUACAAACAAAGUAUUUCAAUGUGCUUUCAAUUGGUCUACCAACUUU-CAGAGGGCAUGAACUAAUGUGUGUACAUG ....((((((.-....(((((...(((((.....)))))..(((((((......)))))))...((((....))))))))-).....((((......))))))))))... ( -22.30, z-score = -0.89, R) >consensus _____UUUGCC_AAGAAGGAGAUACGAUAUACCCUAGCAUGAGAGGGUAU__AUGCACAUCACAUUGAAUAAGGAACAGGACAGAUGCCAUUCCCCAGAAAAUG______ ..................((........(((((((........))))))).........))................................................. ( -5.97 = -5.05 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:05 2011