| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,206,964 – 12,207,077 |
| Length | 113 |
| Max. P | 0.530479 |
| Location | 12,206,964 – 12,207,077 |
|---|---|
| Length | 113 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 73.65 |
| Shannon entropy | 0.54290 |
| G+C content | 0.49182 |
| Mean single sequence MFE | -34.77 |
| Consensus MFE | -11.74 |
| Energy contribution | -11.70 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12206964 113 + 27905053 ACAGCGGGUAACCAAGCCACUCCUUGCGAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA--GCCCGC--AAGGAUGUGG-UGCUGCCAUG .((((((....))..(((((((((((((...((((((....))))))......(((.....((((...........))))......)--)).)))--))))).))))-)))))..... ( -44.60, z-score = -3.71, R) >droSim1.chr3R 18260343 113 - 27517382 ACAGCGGGUAACCAAGCCACUCCUUGCGAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA--GCCCGC--AAGGAUGUGG-UGCUGCCAUG .((((((....))..(((((((((((((...((((((....))))))......(((.....((((...........))))......)--)).)))--))))).))))-)))))..... ( -44.60, z-score = -3.71, R) >droSec1.super_12 182829 113 - 2123299 ACAGCGGGUAGCCAAGCCACUUCUUGCGAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA--GCCCGC--AAGGAUGUGA-UGCUGCCAUG ......((((.....(((((((...(((...((((((....)))))).....))).)))))))...............((((((.((--..((..--..)).)))))-)))))))... ( -40.40, z-score = -2.54, R) >droYak2.chr3R 14622257 113 - 28832112 ACAGCGGGUAACUAAGCCACUCCUUGCGAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA--GCCCGC--AAGGAUGUGG-UGCUGCCAUG .((((((....))..(((((((((((((...((((((....))))))......(((.....((((...........))))......)--)).)))--))))).))))-)))))..... ( -41.90, z-score = -2.94, R) >droEre2.scaffold_4770 11734672 113 + 17746568 GCAGCGGGUAACUUAGCCACUCCUUGCGAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA--GCCCGC--AAGGAUGUGG-UGCUGCCAUG (((((((....))..(((((((((((((...((((((....))))))......(((.....((((...........))))......)--)).)))--))))).))))-)))))).... ( -44.60, z-score = -3.38, R) >droAna3.scaffold_13340 15558232 90 + 23697760 ------------------ACUCCGUGCCAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA--GGCCGCC-AAGGAUAUGG-UCCU------ ------------------....((.(((...((((((....))))))....(((((((((((.....)))))))....)))).....--)))))..-.(((((...)-))))------ ( -23.50, z-score = -0.58, R) >dp4.chr2 8394342 94 - 30794189 --GGGGGGGGAAGCGAUGGUGCUUGUGGA----------------ACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACACAGCCUCC-AAAGGAUAUGGCCCCAG----- --(((((..((.(((((((((.(((((..----------------.)))))(((((....)))))))))))......))).))..).((.(((..-..)))...)).))))..----- ( -24.00, z-score = 0.57, R) >droPer1.super_3 2195291 108 - 7375914 ----GGGGGGAAGCGAUGGGGCUGGUGGAGCAUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACACAGCCUCC-AAAGGAUAUGGCCCCAG----- ----(((((....)..((((((((.((..((.(((((....))))).....(((((....))))).............))..))...))))).))-)..........))))..----- ( -34.80, z-score = -0.86, R) >droVir3.scaffold_13047 1911883 104 + 19223366 -------------AAUCGGAGUGUUUCCAGAGUUGGUAUUAACCGACAUAAACGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACACAGCCCGCCAAAGGAUAUGGAUAUGGGUUU- -------------....(..((((((.....((((((....))))))....(((((....))))).........))))))..).....(((((.(((.......)))....))))).- ( -25.00, z-score = -0.76, R) >droGri2.scaffold_14906 8749890 105 + 14172833 ------------UAGCUGGAGUGUUUCGAGAGUUGGUAUUAACCGACAUAAACGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACACAGCCCGCCAAAGGAUAUGGAUAUUAAUAU- ------------..((((((((((((..((.((((((....))))))....(((((....))))).....))..)))))).))....))))((......))................- ( -24.30, z-score = -1.13, R) >consensus __AGCGGGUAACCAAGCCACUCCUUGCGAGAGUUGGCAUUAGCCGACAUAAAUGCUAAGUGGCGUCAUCAUUUAAAACGCAUCAACA__GCCCGC__AAGGAUAUGG_UGCUGCCAU_ ...............................((((((....))))))...........((.((((...........))))....)).....((......))................. (-11.74 = -11.70 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:45 2011