| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,204,381 – 12,204,486 |
| Length | 105 |
| Max. P | 0.622748 |
| Location | 12,204,381 – 12,204,486 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.40 |
| Shannon entropy | 0.56232 |
| G+C content | 0.49344 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -17.78 |
| Energy contribution | -18.18 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.55 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12204381 105 + 27905053 ----------UCACGCCGCUUCUCGAUUCUCAUGCGCUCUCUUAUUCGCCCGGGGUUUUUGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ----------....(((..........((((..(((..........)))..))))....((((((((((...((((..((....))..))))..))))))))))....))).... ( -28.90, z-score = 0.05, R) >droSim1.chr3R 18257756 105 - 27517382 ----------UCACGCCGCUUCUCGCUUCUCAUGCGCUCUCUUAUUCGCCCGGGGUUUUUGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ----------....((((((((..((.......))((..........))..)))))...((((((((((...((((..((....))..))))..))))))))))....))).... ( -29.70, z-score = -0.05, R) >droSec1.super_12 180213 105 - 2123299 ----------UCACGCCGCUUCUCGCAUCUCAUGCGCUCUCUUAUUCGCCCGGGGUUUUUGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ----------....(((((.....))(((((..(((..........)))..)))))...((((((((((...((((..((....))..))))..))))))))))....))).... ( -30.70, z-score = -0.30, R) >droYak2.chr3R 14619672 98 - 28832112 ----------UCACGCCGCUUCUC-------AGGCGCUCUCUUAUUCGCCCGGGGUUUUCGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ----------....(((...((((-------.((((..........)))).)))).....(((((((((...((((..((....))..))))..))))))))).....))).... ( -33.10, z-score = -1.14, R) >droEre2.scaffold_4770 11732050 98 + 17746568 ----------UCACUCCGCUUCUC-------AUGCGCUCUCUUAUUCGCCCGGGGUUUUCGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ----------..(((((((.....-------..))((..........))..)))))....(((((((((...((((..((....))..))))..)))))))))............ ( -27.40, z-score = -0.35, R) >droAna3.scaffold_13340 15555902 101 + 23697760 ------------UCACUGCGGAUGGCCGCUUUUCGCCUCUUUUGGAU--UCGCUUUUUUCGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ------------..........(((((((......((......))..--..)).......(((((((((...((((..((....))..))))..))))))))).....))))).. ( -32.00, z-score = -0.87, R) >dp4.chr2 8391548 112 - 30794189 CCCUUUCCCUUUCCCCUUUGUAUUCCCUCUCUUG-AUUCCCUUUUGC--CUUGGGUUUUCGGGGCGUAUAAAUCAAAAUUCGCGCAAAUUGAAAAUUCGCCCCAUGUUGGCUACA ..................((((..((..(....(-(..(((......--...)))...))((((((......((((............)))).....))))))..)..)).)))) ( -20.30, z-score = -0.04, R) >droWil1.scaffold_181130 3440013 103 + 16660200 ----------UACCUGCGAUUCUCCUCCCUCUUGGACUCUCUGGGUC--CACUCUUUUUCGGGGCGUAUAAAUCAAAAAGUGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ----------..((.(((..............((((((.....))))--)).........(((((((((...((((...(....)...))))..))))))))).))).))..... ( -29.30, z-score = -1.96, R) >droVir3.scaffold_13047 1907814 89 + 19223366 ---------------UCGC-UACAGUUUCGGGUCU----------UACGUUUAUUUUUUUGGGGCGUAUAAAUCAAAAUGCACACAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ---------------....-..........((((.----------.(((..........((((((((((...((((..((....))..))))..))))))))))))).))))... ( -23.60, z-score = -1.53, R) >droMoj3.scaffold_6540 3837712 100 + 34148556 ---------------UCGCGUUUAAUUUUGGGCCUCUGCCUUGGUUUGAUUUGCUUUUUUCGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ---------------..((((((......((((....))))....(..((((((.........((((((........))))))))))))..)))))))(((.......))).... ( -24.70, z-score = 0.72, R) >consensus __________UCACGCCGCUUCUCGCUUCUCAUGCGCUCUCUUAUUCGCCCGGGGUUUUCGGGGCGUAUAAAUCAAAAUGCGCGCAAAUUGAAAAUGCGCCCCAUGUUGGCCACA ............................................................(((((((((...((((..((....))..))))..)))))))))............ (-17.78 = -18.18 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:44 2011