| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,188,711 – 12,188,804 |
| Length | 93 |
| Max. P | 0.655387 |
| Location | 12,188,711 – 12,188,804 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 67.18 |
| Shannon entropy | 0.59453 |
| G+C content | 0.52416 |
| Mean single sequence MFE | -33.89 |
| Consensus MFE | -13.25 |
| Energy contribution | -14.64 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12188711 93 - 27905053 -AGGUGUACAUUUUGGGCUUCAGUCUGGGAGUUGGGGUCCCAGACCGCAGGUUGGAUUCGGA--UGCUGCCCUGACUUGGGCCCAA-AGUGAUGAAU----------------- -.......(((((((((((..((((.(((.(((.((((((..((((...)))))))))).))--)....))).))))..)))))))-))))......----------------- ( -42.40, z-score = -3.23, R) >droSim1.chr3R 18242738 93 + 27517382 -AGGUGUACAUUUUGGGCUUCAGGCUGGGAGUUGGGGUCCCAGGCCGCAGGUUGGAUUCGGA--UGCUGCCCUGACUUGGGCCCAA-AGUGAUGAAU----------------- -.......(((((((((((.(((((.(((.(((.((((((..((((...)))))))))).))--)....))).).)))))))))))-))))......----------------- ( -38.30, z-score = -1.45, R) >droSec1.super_12 164663 92 + 2123299 -AGGUGUACAUUUUGGGCUUCAGGCUGGGAGUUGGGGUCCCAGGCCGCAGGUUGGAUUCGGA--UGCUGCCCUGACUU-GGCCCAA-AGUGAUGAAU----------------- -.......((((((((((((((((((((((.......))))))((.(((..(((....))).--))).)))))))...-)))))))-))))......----------------- ( -37.40, z-score = -1.40, R) >droYak2.chr3R 14603930 93 + 28832112 -AGGUGUACAUUUUGGGUUUCAGGCUGGGAGUUGGGGU-UCAGACCGCAGGUUGGAUUUGGA--UGCUGCCCUGACUUGGGCCCAAGAGUGAUGAAU----------------- -.....(((.(((((((((.((((..(((.((.((.((-((((((((.....))).))))))--).)))))))..))))))))))))))))......----------------- ( -31.00, z-score = -0.84, R) >droEre2.scaffold_4770 11715999 91 - 17746568 -GUGUGUACAUUUUGGGUUUCGAGCUGGGAGCUGGGUU--CAGACCGCAGGUUGGAUUCGGA--UGCUGCCCUGACUUGGGCCCAA-AGUGAUGAAU----------------- -.......(((((((((((.(((((.((((((((((((--(((.((...)))))))))))..--.))).))).).)))))))))))-))))......----------------- ( -34.50, z-score = -1.97, R) >droAna3.scaffold_13340 8157804 83 + 23697760 -AGCUGCAC-UUUUGGG-----AGCUGUGAUUUGAG-----AGCUCUGAGACACGGGUCGCA--AGUCGCCCUGACUCGGGCCCAGAAGUGAUGAAU----------------- -.....(((-(((((((-----((((.(......).-----))))(((((.((.(((((...--.)..)))))).))))).))))))))))......----------------- ( -33.60, z-score = -2.45, R) >droWil1.scaffold_181130 13239208 112 + 16660200 GAGCUG-GCAACUUGUCCCUAAAUGUAAAGAGAGGGAG-ACGGAGCUUAGAUUGGUCUAACAACUGAUGUUUUGAUUAAAAUCUAUAAAGUACUUGUAUUAUCUCGUGUUGAAU (((...-(((((((.(((((...(....)...))))).-.((((((((((.(((......))))))).)))))).............))))...))).....)))......... ( -20.00, z-score = 0.66, R) >consensus _AGGUGUACAUUUUGGGCUUCAGGCUGGGAGUUGGGGU_CCAGACCGCAGGUUGGAUUCGGA__UGCUGCCCUGACUUGGGCCCAA_AGUGAUGAAU_________________ ........((((((((..(((((.(((.(..(((......)))..).))).)))))............((((......)))))))).))))....................... (-13.25 = -14.64 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:43 2011