Locus 10215

Sequence ID dm3.chr3R
Location 12,185,023 – 12,185,119
Length 96
Max. P 0.994290
window14049 window14050

overview

Window 9

Location 12,185,023 – 12,185,119
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 73.85
Shannon entropy 0.50508
G+C content 0.46851
Mean single sequence MFE -29.35
Consensus MFE -18.56
Energy contribution -19.57
Covariance contribution 1.01
Combinations/Pair 1.35
Mean z-score -1.51
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.51
SVM RNA-class probability 0.945566
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12185023 96 + 27905053
AAGUUGGAA-GACACUAACGCGUUAGAUGCGCACAGGCA-CUAACGCGUGGUAAUCGAUGGGCAGCACUGGUGUGCUCAAAAUGAGCACAGCUGGUAU
..(((.(..-((.((((.((((((((.(((......)))-))))))))))))..))..).)))...((..((((((((.....))))))).)..)).. ( -37.20, z-score =  -3.22, R)
>droEre2.scaffold_4770 11712324 96 + 17746568
AUGUUGAAA-GGCACUAACGCGUUAGAUACGCAAAAGCA-CUAACGCGUGGUAAUCGAUGGGCAGCACUGGUGAGCUCAAAAUGAGCAGAGUUGGUAU
..(((((..-.((....(((((((((....((....)).-))))))))).))..))))).......(((..(..((((.....))))...)..))).. ( -26.10, z-score =  -0.73, R)
>droYak2.chr3R 14600396 96 - 28832112
AAGUUGAAA-GGCACUAACGCGUUAGAUACGCAAACGCA-CUAACGCGUGUUAAUCGAUGGGCAGCACUGGUGAGCUCAAAAUGAGCUGAGCUGGUAU
..((((...-((.....(((((((((....((....)).-))))))))).....))......))))((..((.(((((.....)))))..))..)).. ( -30.30, z-score =  -1.65, R)
>droSec1.super_12 160948 96 - 2123299
AAGUUG-AAUGACACUAACGCGUUAGAUGCGCAAAGGCA-CUAACGCGUGGUAAUCGAUGGGCAGCACUGGUGUGCUCAAAAUGAGCAGAACUGGUAU
..((((-.((((.((((.((((((((.(((......)))-))))))))))))..)).))...))))((..((.(((((.....)))))..))..)).. ( -35.40, z-score =  -3.51, R)
>droSim1.chr3R 18239024 97 - 27517382
ACGUUGGAAUGACACUAACGCGUUAGAUGCGCACAGGCAACUAACGCGUGGUAAUCGAUGGGCAGC-CUGGUGUGGUCAAAAUGAGCAGAACUGGUAU
.((((((....((....(((((((((.(((......))).))))))))).))..))))))....((-(.(((.((.((.....)).))..)))))).. ( -31.00, z-score =  -1.40, R)
>droWil1.scaffold_181130 3412160 95 + 16660200
-GAGUAAUUUCGCUGCAACGCGUAUGAUGCAAUGUAAUAAUGGAAAAUCAGCGUUAGAAUUGUUUCACUGGAGGUUUCACAGUGUAUUGUUAUUGU--
-.((((((..(((((....((.(.(((.(((((....(((((.........)))))..))))).)))....).))....)))))....))))))..-- ( -16.10, z-score =   1.46, R)
>consensus
AAGUUGAAA_GACACUAACGCGUUAGAUGCGCAAAGGCA_CUAACGCGUGGUAAUCGAUGGGCAGCACUGGUGUGCUCAAAAUGAGCAGAGCUGGUAU
..((((...........(((((((((.(((......))).))))))))).............))))((((((..((((.....))))...)))))).. (-18.56 = -19.57 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 12,185,023 – 12,185,119
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 73.85
Shannon entropy 0.50508
G+C content 0.46851
Mean single sequence MFE -24.69
Consensus MFE -14.74
Energy contribution -16.05
Covariance contribution 1.31
Combinations/Pair 1.38
Mean z-score -2.29
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.69
SVM RNA-class probability 0.994290
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12185023 96 - 27905053
AUACCAGCUGUGCUCAUUUUGAGCACACCAGUGCUGCCCAUCGAUUACCACGCGUUAG-UGCCUGUGCGCAUCUAACGCGUUAGUGUC-UUCCAACUU
....(((((((((((.....))))))).....))))......(((....(((((((((-(((......))).)))))))))....)))-......... ( -32.90, z-score =  -3.75, R)
>droEre2.scaffold_4770 11712324 96 - 17746568
AUACCAACUCUGCUCAUUUUGAGCUCACCAGUGCUGCCCAUCGAUUACCACGCGUUAG-UGCUUUUGCGUAUCUAACGCGUUAGUGCC-UUUCAACAU
...........((((.....))))......(..(((.............(((((((((-(((......))).))))))))))))..).-......... ( -22.91, z-score =  -2.03, R)
>droYak2.chr3R 14600396 96 + 28832112
AUACCAGCUCAGCUCAUUUUGAGCUCACCAGUGCUGCCCAUCGAUUAACACGCGUUAG-UGCGUUUGCGUAUCUAACGCGUUAGUGCC-UUUCAACUU
....((((.((((((.....))))).....).))))......((...(((((((((((-((((....)))).)))))))))..))...-..))..... ( -28.50, z-score =  -2.92, R)
>droSec1.super_12 160948 96 + 2123299
AUACCAGUUCUGCUCAUUUUGAGCACACCAGUGCUGCCCAUCGAUUACCACGCGUUAG-UGCCUUUGCGCAUCUAACGCGUUAGUGUCAUU-CAACUU
....((((.((((((.....)))).....)).))))......(((....(((((((((-(((......))).)))))))))....)))...-...... ( -27.10, z-score =  -3.00, R)
>droSim1.chr3R 18239024 97 + 27517382
AUACCAGUUCUGCUCAUUUUGACCACACCAG-GCUGCCCAUCGAUUACCACGCGUUAGUUGCCUGUGCGCAUCUAACGCGUUAGUGUCAUUCCAACGU
....((((.(((................)))-))))......(((....(((((((((.(((......))).)))))))))....))).......... ( -22.69, z-score =  -1.03, R)
>droWil1.scaffold_181130 3412160 95 - 16660200
--ACAAUAACAAUACACUGUGAAACCUCCAGUGAAACAAUUCUAACGCUGAUUUUCCAUUAUUACAUUGCAUCAUACGCGUUGCAGCGAAAUUACUC-
--............(((((.((....)))))))............(((((..............((.(((.......))).))))))).........- ( -14.03, z-score =  -1.00, R)
>consensus
AUACCAGCUCUGCUCAUUUUGAGCACACCAGUGCUGCCCAUCGAUUACCACGCGUUAG_UGCCUUUGCGCAUCUAACGCGUUAGUGCC_UUUCAACUU
....((((..(((((.....))))).......)))).............(((((((((.(((......))).)))))))))................. (-14.74 = -16.05 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:42 2011