| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,182,527 – 12,182,629 |
| Length | 102 |
| Max. P | 0.663758 |
| Location | 12,182,527 – 12,182,629 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 61.94 |
| Shannon entropy | 0.76333 |
| G+C content | 0.37315 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -5.68 |
| Energy contribution | -6.86 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12182527 102 - 27905053 AUAUGAGAAUAAUUAGUUAGGAGGCAGCCGAAUCAGCGGAAUCAAAUCGAUUUCCCUCGACUGCAUUUAGCAGUGCUGCACCAUCAAAUCAAAAAUAAAUUA------ ...................((..((((((((....(.((((((.....))))))).)))(((((.....)))))))))).))....................------ ( -22.40, z-score = -1.42, R) >droMoj3.scaffold_6540 18794005 79 + 34148556 GAAACACAAUAAAUAAUUAUCAUUAAUU---GCCAAUUGUUGAAAAAGGGCUUACGUUGAAAGUGAAGUGC-GUGAGAGAUUA------------------------- ......((((((.((((((....)))))---)....))))))........(((((((............))-)))))......------------------------- ( -10.80, z-score = 0.04, R) >droAna3.scaffold_13340 15533523 88 - 23697760 -------ACUAAUUGAUUGCGAGCCA-------------AAUCAAAUCGGUCCUCCUGAAUAAGGCUGUAUAAUACUACAGUCGCCAAUUCAGCAAGAGUAGCAAGUA -------(((..((((((........-------------))))))...(.(.(((((((((..(((((((......)))))))....))))))...))).).).))). ( -20.00, z-score = -1.67, R) >droEre2.scaffold_4770 11709786 100 - 17746568 UUAUGAAAAUAACUAAUUACGAGGCUGCCGAAUCAGCGGAAUCAAAUUGAUAUCCCUCGACUGCGUUUUGCAGUGC--CACCAUCAAAUCAAAAAUAAAUUA------ ...(((.............((((((((......))))((((((.....))).)))))))(((((.....)))))..--.....)))................------ ( -20.50, z-score = -1.91, R) >droYak2.chr3R 14597918 100 + 28832112 AUAUGAAAAUAAUUAAUUACGAGGCUGCCGAAUAAGCGGAAUCAAAUUGAUUUCCCUCGACUGCAUUUUGCAGUGA--CACCAUCAAACCAAAAAUAAAUUA------ ...(((.............(((((((........)))((((((.....)))))).))))(((((.....)))))..--.....)))................------ ( -20.70, z-score = -2.68, R) >droSec1.super_12 158605 102 + 2123299 AUAUGAGAAUAAUUAGUUACGAGGCACCCGAAUCAGCGGAAUCAAAUCGAUUUCCCUCGACUGCAUUUAGCAGUGCCGCACCAUCAAAUCAAAAAUAAAUAA------ ...(((.............(((((...(((......)))((((.....))))..)))))(((((.....))))).........)))................------ ( -18.60, z-score = -1.14, R) >droSim1.chr3R 18236415 102 + 27517382 AUAUGAGAAUAAUUAGUUACGAGGCACCCGAACCAGCGGAAUCAAAUCGAUUUCCCUCGACUGCAUUUAGCAGUGCCGCACCAUCAAAUCAAAAAUAAAUUA------ ...(((.............(((((...(((......)))((((.....))))..)))))(((((.....))))).........)))................------ ( -18.60, z-score = -1.27, R) >consensus AUAUGAGAAUAAUUAAUUACGAGGCAGCCGAAUCAGCGGAAUCAAAUCGAUUUCCCUCGACUGCAUUUUGCAGUGC_GCACCAUCAAAUCAAAAAUAAAUUA______ ...................(((((...(((......))).(((.....)))...)))))(((((.....))))).................................. ( -5.68 = -6.86 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:40 2011