| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,180,360 – 12,180,442 |
| Length | 82 |
| Max. P | 0.726172 |
| Location | 12,180,360 – 12,180,442 |
|---|---|
| Length | 82 |
| Sequences | 8 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 68.56 |
| Shannon entropy | 0.62737 |
| G+C content | 0.48816 |
| Mean single sequence MFE | -24.68 |
| Consensus MFE | -5.98 |
| Energy contribution | -5.40 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.69 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12180360 82 - 27905053 GGCGAUAAAGUCGACAACAGCCAAAGCCGAGAAUAAUUGGCUUUGGCUCCGUU--UUGCGGCCCACGACAACA-GAUAAUAGCCG (((.((...((((.....((((((((((((......))))))))))))(((..--...)))....))))....-.))....))). ( -31.40, z-score = -4.66, R) >droSim1.chr3R 18233854 82 + 27517382 GGCGAUAAAGUCAACAACAGCCAAAGCCGAGAAUAAUUGGCUUUGGCUUCGUU--UUGCGGCCCACGACAACA-GAUGAUAGCCG (((...............((((((((((((......))))))))))))(((((--(((((.....)).)))..-)))))..))). ( -30.30, z-score = -4.23, R) >droSec1.super_12 156426 82 + 2123299 GGCGAUAAAGUCGACAACAGCCAAAGCCGAGAAUAAUUGGCUUUGGCUUCGUU--UUGCGGCCCACGACAACA-GAUGAUAGCCG (((...............((((((((((((......))))))))))))(((((--(((((.....)).)))..-)))))..))). ( -30.30, z-score = -3.98, R) >droYak2.chr3R 14595772 82 + 28832112 UGCGAUAAAGUCGACAACAGCCAAAGCCGAGAAUAAUUGACUUUGGGUCCGCU--UUGUGGCCCACGACAGCA-GUUGAUAGCCG ....(((((((.(((.....((((((.(((......))).))))))))).)))--))))(((...((((....-))))...))). ( -23.40, z-score = -1.71, R) >droEre2.scaffold_4770 11707646 82 - 17746568 AGCGAUUAAGUCGACUAAAGCCAAAGCCGAGUAUAAUUGGCUUUGGCUCUGUU--UUGUGGCCCAUGACAGCA-GAUGAUAGCCG .((.((((...........(((((((((((......)))))))))))((((((--(..((...))..).))))-)))))).)).. ( -27.80, z-score = -2.97, R) >dp4.chr2 8365966 83 + 30794189 CGCGACAAAGUGAACAACAA-AAGAGUUGAAAAUAAUUGGCGUCGGCUUCGCUGGCGGCAGUACCAGAUACCA-GAUAAAUGCCA .(((..........((((..-....))))......((((.(((((((...))))))).))))...........-......))).. ( -19.10, z-score = -0.47, R) >droPer1.super_3 2167232 83 + 7375914 UGCGACAAAGUGAACAACAA-AAGAGUUGAAAAUAAUUGGCGCCGGCUUCGCUGGCGGCAGUACCAGAUACCA-GAUAAAUGCCA .(((..........((((..-....))))......((((.(((((((...))))))).))))...........-......))).. ( -21.50, z-score = -1.21, R) >droGri2.scaffold_15074 5875778 75 - 7742996 ----------CACUCAACAAAGAGAGCUGUAAACAAUUGGCGCCCGGCACACGAUAAGUGCUCAAAGCCUGAAUGAUAAAUGUGA ----------..(((......)))..............(((....(((((.......)))))....)))................ ( -13.60, z-score = 0.16, R) >consensus GGCGAUAAAGUCGACAACAGCCAAAGCCGAGAAUAAUUGGCUUUGGCUUCGCU__UUGCGGCCCACGACAACA_GAUAAUAGCCG .........................(((((......)))))...(((.((((.....)))).....(....).........))). ( -5.98 = -5.40 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:40 2011