| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,175,040 – 12,175,106 |
| Length | 66 |
| Max. P | 0.533772 |
| Location | 12,175,040 – 12,175,106 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 68.57 |
| Shannon entropy | 0.60047 |
| G+C content | 0.46833 |
| Mean single sequence MFE | -14.79 |
| Consensus MFE | -6.92 |
| Energy contribution | -8.80 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12175040 66 - 27905053 GUCAGGCAUCGAUAAAAGUACUCAUUUAUCGGCGGGGCAGCGCCACGUUUUCAAAUUGGAAAACAA----------- ....(((..(((((((.(....).)))))))((......)))))..((((((......))))))..----------- ( -18.40, z-score = -3.10, R) >droSim1.chr3R 18228553 66 + 27517382 GCAAGGCAUCGAUAAAAGUACUCAUUUAUCGGCGGGGCUGCGCCACGUUUUCAAAUUGGGAAAUCA----------- ....(((..(((((((.(....).)))))))(((....))))))..((((((......))))))..----------- ( -15.10, z-score = -0.84, R) >droSec1.super_12 151196 66 + 2123299 GCAAGGCAUCGAUAAAAGUACUCAUUUAUCGGCGGGGCAGCGCCACGUUUUCAAAUUGGGAAACCA----------- ....(((..(((((((.(....).)))))))((......)))))............(((....)))----------- ( -18.00, z-score = -1.97, R) >droYak2.chr3R 14590637 66 + 28832112 GCCAGGCAUCGAUAAAAGUACUCAUUUAUCGGCGCGGCAGCGCCACGUUUUCAAAUUUGGAAGCCC----------- ....(((.((((((((.(....).))))))(((((....)))))...............)).))).----------- ( -20.60, z-score = -2.16, R) >droEre2.scaffold_4770 11703125 66 - 17746568 UCCAGGCAUCGAUAAAACUACUCAUUUAUCGGCGGAGCAGCGCCACGUUUUCAAAUUUGGAAUCCC----------- ((((((....((((((........))))))((((......))))...........)))))).....----------- ( -15.30, z-score = -1.48, R) >droAna3.scaffold_13340 15525559 67 - 23697760 GGCUGGCAUCAAUAAAAGUUAUCG-UUAUCGG------GGCGCCACGUUUGAAAACUC---CCCCCAAAGAGAACAA .................(((.((.-.....((------((.(.............).)---))).....)).))).. ( -7.92, z-score = 2.20, R) >droVir3.scaffold_13047 1812317 59 - 19223366 -------GUCGGUAAAAGUAAUUUGCUGUCACGUUUCACGCGCAAUGAAUUC-AAUUUGGAGUCCAA---------- -------(.(((((((.....))))))).).(((.....)))...((.((((-......)))).)).---------- ( -8.20, z-score = 0.73, R) >consensus GCCAGGCAUCGAUAAAAGUACUCAUUUAUCGGCGGGGCAGCGCCACGUUUUCAAAUUGGGAAACCA___________ ....(((..(((((((........)))))))((......)))))..((((((......))))))............. ( -6.92 = -8.80 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:39 2011