| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,173,149 – 12,173,257 |
| Length | 108 |
| Max. P | 0.614744 |
| Location | 12,173,149 – 12,173,257 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.23 |
| Shannon entropy | 0.40254 |
| G+C content | 0.44350 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.15 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12173149 108 - 27905053 ------------GCUACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUGGUGAUUCCCACACAGACGAUUAUCGAGAAUUAUAAGC ------------(((...((((((((((((...(((((....(((((.......))))).........(((((((....)))))))...........)))))))))))))))))...))) ( -37.50, z-score = -5.01, R) >droSim1.chr3R 18226661 108 + 27517382 ------------GCCACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUGGUGAUUCCCACACAGACGAUUAUCGAGAACUAUAAGC ------------.....((.((((((((((...(((((....(((((.......))))).........(((((((....)))))))...........)))))))))))))))))...... ( -34.00, z-score = -3.66, R) >droSec1.super_12 149316 108 + 2123299 ------------GCCACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUCGUGAUUCCCACACAGACGAUUAUCGAGAACUAUAAGC ------------.....((.((((((((((...(((((....(((((.......)))))...(((((..(((.......))).))))).........)))))))))))))))))...... ( -31.30, z-score = -3.24, R) >droYak2.chr3R 14588733 108 + 28832112 ------------GCCACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUGGUUAUCCCCACACAGACGAUUAUCGAGAACUACAAGC ------------.....((.((((((((((...(((((....(((((.......)))))..........((((((....))))))............)))))))))))))))))...... ( -32.20, z-score = -3.48, R) >droEre2.scaffold_4770 11701212 108 - 17746568 ------------GCCACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUGGUUAUCCCCACACAGACGAUUAUCGAGAACUAUAAGC ------------.....((.((((((((((...(((((....(((((.......)))))..........((((((....))))))............)))))))))))))))))...... ( -32.20, z-score = -3.53, R) >droAna3.scaffold_13340 15523103 108 - 23697760 ------------CCCACAGAUUCUCGGUGAACUUUGUCAACAGCCCGGACUGCACGGACAACAUCACAUACCACUUUAAGGUGGUGAUUCCCACCAAGACGAUAAUCGAGAACUACAAGC ------------.....((.((((((((.....(((((....(.(((.......))).).........(((((((....)))))))...........)))))..))))))))))...... ( -27.60, z-score = -2.02, R) >dp4.chr2 8358154 120 + 30794189 UCUCCAUCUCUCUCUACAGAUUCUCGGUGAACUUUGUGAACAGUCCAGUCUGUACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUCCCCACACAGACGAUCAUCGAGAACUACAAGC .................((.((((((((((.(((((((.........((((....))))..((((((.............)))))).......)))))).).))))))))))))...... ( -30.92, z-score = -1.88, R) >droPer1.super_3 2159170 120 + 7375914 UCUCCAUCUCUCUCUACAGAUUCUCGGUGAACUUUGUGAACAGUCCAGUCUGUACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUCCCCACACAGACGAUCAUCGAGAACUACAAGC .................((.((((((((((.(((((((.........((((....))))..((((((.............)))))).......)))))).).))))))))))))...... ( -30.92, z-score = -1.88, R) >droWil1.scaffold_181130 3385693 109 - 16660200 -----------ACCCACAGGUUCUCGGUAAAUUUUGUCAACGAUCCAACCUGCACAGACAACAUCACGUAUCAUUUUAAGGUACUGGUACGCCUACAGACCAUUAUUGAGAACUACAAAC -----------.......((((((((((((..(((((...((..(((((((.........((.....)).........))))..)))..))...)))))...))))))))))))...... ( -22.67, z-score = -1.53, R) >droVir3.scaffold_13047 1802780 108 - 19223366 ------------AUUACAGAUUUUCCAUUAAUUUUGUGAACAGUCCCAGCUGCACAGACAACAUAACAUAUCAUUUUAAAGUAAAGGUGCCAUCGCAGACGAUUGUCGAGAAUUACAAGA ------------......(((((((.........((((..((((....))))))))(((((..........((((((......))))))...(((....)))))))))))))))...... ( -17.00, z-score = -0.56, R) >droMoj3.scaffold_6540 18779607 108 + 34148556 ------------UUUACAGAUUCUCGAUCAAUUUCGUAAACAGUCCCAGCUGCACAGACAACAUAACAUAUCAUUUUAAAGUUAGGGUACCCGCACAGACGAUCGUCGAGAAUUACAAGA ------------......((((((((((.....((((...((((....))))............................((..((....))..))..))))..))))))))))...... ( -20.40, z-score = -2.08, R) >droGri2.scaffold_14906 12623830 108 - 14172833 ------------UUUACAGAUUUUCCAUAAAUUUCGUAAACAGUCCCAACUGCACAGACAACAUAACGUAUCAUUUUAAAGUUAGGAUACCGACACAGACAAUCAUCGAGAACUACAAGA ------------(((((((((((.....)))))).)))))..((((.((((.........((.....))..........)))).))))................................ ( -9.41, z-score = 0.36, R) >consensus ____________GCCACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACAGACAACAUCACAUACCACUUCAAGGUGGUGAUCCCCACACAGACGAUUAUCGAGAACUACAAGC .................((.((((((((....(((((...(((......))).))))).....((((.............))))....................))))))))))...... (-10.72 = -10.15 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:38 2011