| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,624,718 – 7,624,811 |
| Length | 93 |
| Max. P | 0.718556 |
| Location | 7,624,718 – 7,624,811 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.15 |
| Shannon entropy | 0.46278 |
| G+C content | 0.50336 |
| Mean single sequence MFE | -27.66 |
| Consensus MFE | -16.84 |
| Energy contribution | -17.01 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7624718 93 - 23011544 -----GUGAAUCGCUUACGAAUGACGAAUGUGUUGUUGUGCCAUCGCUGCGACACUUUCAAGUACA---GUGGCUUCUGCAGCGUAACGAAACCCAAAAAC------ -----.....(((.(((((......(((.(((((((.(((....))).))))))).))).......---...((....))..))))))))...........------ ( -22.40, z-score = -0.12, R) >droAna3.scaffold_12916 15554522 107 - 16180835 CGUAUGUGAAACGCUUACGAAUGACGAAUGUGUUGUUGUGUCAGCUCAGCGACACUUUCAAGUACAAGGGUAUCCUUUGGAAAGGAACAAGAACCAGGAGCCUGGAC ((((.(((...))).))))......(((.(((((((((.(....).))))))))).))).....((((((...))))))..............((((....)))).. ( -31.10, z-score = -1.56, R) >droEre2.scaffold_4929 16544171 93 - 26641161 -----GUGAAUCGCUUACGAAUGACGAAUGUGUUGUUGUGCCAGCGCUGCGACACAUUCAAGUACA---GUGGCUCCUGCGGCGGAACGAAACCCAAAAAC------ -----((.(.(((....))).).))(((((((((((.(((....))).))))))))))).......---((.((....)).))((........))......------ ( -29.10, z-score = -1.43, R) >droYak2.chr2L 17054116 93 + 22324452 -----GUGAAUCGCUUACGAAUGACGAAUGUGUUGUUGUGCCAGCGCUGCGACACUUUCAAGUACA---GUGGCUCCUGCGGCGGAACGAAACCCAAAAAC------ -----((.(.(((....))).).))(((.(((((((.(((....))).))))))).))).......---((.((....)).))((........))......------ ( -24.80, z-score = -0.10, R) >droSec1.super_3 3138415 93 - 7220098 -----GUGAAUCGCUUACGAAUGACGAAUGUGUUGUUGUGCCAUCGCUGCGACACUUUCAAGUACA---GUGGCUCCUGCGGCGUAACGAAACCCAAAAAC------ -----.....(((.((((.......(((.(((((((.(((....))).))))))).))).......---((.((....)).)))))))))...........------ ( -24.40, z-score = -0.58, R) >droSim1.chr2L 7421608 93 - 22036055 -----GUGAAUCGCUUACGAAUGACGAAUGUGUUGUUGUGCCAUCGCUGCGACACUUUCAAGUACA---GUGGCUCCUGCGGCGUAACGAAACCCAAAAAC------ -----.....(((.((((.......(((.(((((((.(((....))).))))))).))).......---((.((....)).)))))))))...........------ ( -24.40, z-score = -0.58, R) >droVir3.scaffold_12963 11097627 89 - 20206255 -----GUCAAUCGCCUACGAAUGACGAAUGUGUUGUUGUGCCAGCGCAGCGACACUUUCAAGU-GUGUGGCAUCCUCUGCUGCCACCAAGUAGCC------------ -----((((.(((....))).))))(((.(((((((((((....))))))))))).)))...(-(.((((((........)))))))).......------------ ( -36.20, z-score = -3.99, R) >droMoj3.scaffold_6500 19843811 78 - 32352404 -----GUCAAUCGUCUACGAAUGACGAAUGUGUUGUUGUGCCAGCGUCGCGACACUUUCAAGUGGCGCGGCAGACACUGCUUU------------------------ -----((((.(((....))).))))....(((((....((((.(((((((...........))))))))))))))))......------------------------ ( -28.90, z-score = -1.72, R) >consensus _____GUGAAUCGCUUACGAAUGACGAAUGUGUUGUUGUGCCAGCGCUGCGACACUUUCAAGUACA___GUGGCUCCUGCGGCGGAACGAAACCCAAAAAC______ .....((.(.(((....))).).))(((.(((((((.(((....))).))))))).)))..........((.((....)).))........................ (-16.84 = -17.01 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:04 2011