| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,151,956 – 12,152,059 |
| Length | 103 |
| Max. P | 0.739355 |
| Location | 12,151,956 – 12,152,059 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 88.01 |
| Shannon entropy | 0.19962 |
| G+C content | 0.34074 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -17.90 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12151956 103 - 27905053 UGUCAUCCACCCAUUGAGUAUCAUAGAUAACCUGAAA-------GAUUAUUAACACAUUUUAUACAUUUCUUUUGUAAGAAGUCUAAGAAAUUAG----AAACCUGGAUGGCAA (((((((((............................-------......................((((((....))))))(((((....))))----)....))))))))). ( -20.10, z-score = -1.72, R) >droSim1.chr3R 18204765 102 + 27517382 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------CAUUAUUAGCACAUUUUAUACGUUUC-UUUAUAAGAAGUCUAAUGGAUUAG----AAACCUGGAUGGCAA (((((((((.......(((((..(((.....)))..)-------))))(((((.((.(((((((......-..))))))).))))))).......----.....))))))))). ( -23.10, z-score = -1.94, R) >droSec1.super_12 128268 102 + 2123299 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------GAUUAUUAGCACACUUUAUACGUUUC-UUUAUAAGAAGUCUAAUAAAUUAG----AAACCUGGAUGGCAA (((((((((...((.((((((....(((((.(.....-------).)))))...)))))).))..(((((-(((((.((....)).))))...))----)))).))))))))). ( -23.80, z-score = -2.84, R) >droYak2.chr3R 14567110 109 + 28832112 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAAUUAUUAGCAUUAUUGGCACAUUUUAAACGUUUC-UCUAUAAGAAGUCUAAUGAUUUAG----GAACCUGGAUGGCAA (((((((((........((((((..(((...((((.....)))).)))..)))))).........(((((-(.......(((((....)))))))----)))).))))))))). ( -25.81, z-score = -1.85, R) >droEre2.scaffold_4770 11677352 106 - 17746568 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------GAUUAUUGGCACAUUUUAAACGUUUC-UUUAUAAGAAGUCCAAAGAUUUAGUAACCAACCUGGAUGGCGA .((((((((........((((((...((((.(.....-------).))))))))))..............-....((..(((((....)))))..)).......)))))))).. ( -20.70, z-score = -0.84, R) >consensus UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA_______GAUUAUUAGCACAUUUUAUACGUUUC_UUUAUAAGAAGUCUAAUGAAUUAG____AAACCUGGAUGGCAA (((((((((....((.((((((...))))..)).))..........(((((((.((.(((((((.........))))))).)))))))))..............))))))))). (-17.90 = -17.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:36 2011