| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,127,679 – 12,127,799 |
| Length | 120 |
| Max. P | 0.523565 |
| Location | 12,127,679 – 12,127,799 |
|---|---|
| Length | 120 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.21 |
| Shannon entropy | 0.20896 |
| G+C content | 0.50294 |
| Mean single sequence MFE | -26.24 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.58 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12127679 120 + 27905053 AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAGCAGGCAACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAACACACCGACACUUCCGUU .....(((((((......)))))))....(((.(....)((((((((....)))))..............((((((....))))))......................)))......))) ( -27.00, z-score = -1.26, R) >droSim1.chr3R 18179522 120 - 27517382 AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAGCAGGCAACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAACACACCGACACUUCCGUU .....(((((((......)))))))....(((.(....)((((((((....)))))..............((((((....))))))......................)))......))) ( -27.00, z-score = -1.26, R) >droSec1.super_12 103676 120 - 2123299 AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAGCAGGCAACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAACACACCGACACUUCCGUU .....(((((((......)))))))....(((.(....)((((((((....)))))..............((((((....))))))......................)))......))) ( -27.00, z-score = -1.26, R) >droYak2.chr3R 14534926 120 - 28832112 AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAACAGGCAACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAACACACCGACACUUCCGUU .....(((((((......)))))))....(((.(....)((((((((....)))))..............((((((....))))))......................)))......))) ( -27.00, z-score = -1.57, R) >droEre2.scaffold_4770 11652789 120 + 17746568 AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAGCAGGCAACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAACACACCGACACUUCCGUU .....(((((((......)))))))....(((.(....)((((((((....)))))..............((((((....))))))......................)))......))) ( -27.00, z-score = -1.26, R) >droAna3.scaffold_13340 15473155 120 + 23697760 AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAGCAGGCAACGUCGCAGCACACGUUGCGUUAUCCUCCAUCCGCGUCGAUGCUGACGCCCACACCAACUACAAACACACCGACACUUCCGUU .....(((((((......)))))))....(((.(....)((((((((....)))))..............((((((....))))))......................)))......))) ( -27.20, z-score = -1.29, R) >dp4.chr2 8308068 120 - 30794189 AUUGAAUAAUCCGAGUCAGGAUUACAUCCAGCAGGCAACGUCGCAGCACACGCUGCGUUAUCCUCCAUCCGCGUCGAUGCUGACGCCCACACCAACUACAAACACACCGACACUUCCGUU ..............((((((((.((........(....)...(((((....))))))).)))))......((((((....))))))......................)))......... ( -28.40, z-score = -1.59, R) >droPer1.super_3 2109491 120 - 7375914 AUUGAAUAAUCCGAGUCAGGAUUACAUCCAGCAGGCAACGUCGCAGCACACGCUGCGUUAUCCUCCAUCCGCGUCGAUGCUGACGCCCACACCAACUACAAACACACCGACACUUCCGUU ..............((((((((.((........(....)...(((((....))))))).)))))......((((((....))))))......................)))......... ( -28.40, z-score = -1.59, R) >droWil1.scaffold_181130 3326929 120 + 16660200 AUUGAAUAAUCCAAGUCAGGAUUAUAUACAGCAGGCGACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCAAUGUUGACGCCAACACCAACUACAAAUACACCGACACUUCCGUU .....(((((((......)))))))........((....((((((((....)))))..............((((((....))))))......................)))....))... ( -26.40, z-score = -1.45, R) >droVir3.scaffold_13047 1743850 120 + 19223366 AUUGAAUAAUCCGAGUCAGGAUUACAUACAACAGGCAACGUCGCAGCACACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAAUACACCGACACUUCCGUU ..............((((((((.((........(....)...(((((....))))))).)))))......((((((....))))))......................)))......... ( -25.80, z-score = -1.11, R) >droMoj3.scaffold_6540 18712746 120 - 34148556 AUUGAAUAAUCCGAGUCAGGAUUACAUCCAACAGGCAACGUCGCAGCACACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAAUACACCGACACUUCCGUU ..............((((((((.((........(....)...(((((....))))))).)))))......((((((....))))))......................)))......... ( -25.80, z-score = -1.16, R) >droGri2.scaffold_14906 12560942 120 + 14172833 AUUGAAUAAUCCGAGUCAGGAUUACAUACAACAAGCAACGUCGCAGCACACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAAUACACCGACACUUCCGUU ......((((((......))))))...............((((((((....)))))..............((((((....))))))......................)))......... ( -24.20, z-score = -1.17, R) >anoGam1.chr2R 49526336 102 + 62725911 ---CCUAAACCCGAGCCAGGAUUACAUCCA---GGCCUCGUCGCAGCAUACGAUCCGCUACCC---AUCGACCUCCGUGCUGGCCUCGACACCAAC---------GCCAUCACUUCCAUU ---.........(((((.((((...)))).---)).)))((((.(((.........)))....---..))))....(((.((((............---------)))).)))....... ( -19.90, z-score = -0.46, R) >consensus AUUGAAUAAUCCGAGUCAGGAUUAUAUCCAGCAGGCAACGUCGCAGCAUACGUUGCGUUAUCCUCCAUCCGCGUCGAUGUUGACGCCAACACCAACUACAAACACACCGACACUUCCGUU ......((((((......)))))).........((....((((((((....)))))..............((((((....))))))......................)))....))... (-22.20 = -22.58 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:29 2011