| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,118,485 – 12,118,564 |
| Length | 79 |
| Max. P | 0.829131 |
| Location | 12,118,485 – 12,118,564 |
|---|---|
| Length | 79 |
| Sequences | 15 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 88.14 |
| Shannon entropy | 0.27749 |
| G+C content | 0.38601 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -12.66 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12118485 79 - 27905053 ---UUACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ---((((((...))))))...................((((((.....))))))....(((((((.((....)).))))))) ( -20.60, z-score = -2.93, R) >droSec1.super_12 94240 79 + 2123299 ---UUACAUACCAUGUGAUCCUAAAAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ---((((((...))))))...................((((((.....))))))....(((((((.((....)).))))))) ( -20.60, z-score = -3.11, R) >droSim1.chr3R 18170186 79 + 27517382 ---UUACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ---((((((...))))))...................((((((.....))))))....(((((((.((....)).))))))) ( -20.60, z-score = -2.93, R) >droYak2.chr3R 14525548 79 + 28832112 ---UUACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ---((((((...))))))...................((((((.....))))))....(((((((.((....)).))))))) ( -20.60, z-score = -2.93, R) >droEre2.scaffold_4770 11642776 79 - 17746568 ---UUACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUUGGCUCC ---((((((...))))))...................((((((.....))))))....((((((..((....))..)))))) ( -19.90, z-score = -2.89, R) >droAna3.scaffold_13340 15463683 82 - 23697760 UUUUUACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ...((((((...))))))...................((((((.....))))))....(((((((.((....)).))))))) ( -20.80, z-score = -3.00, R) >dp4.chr2 8297811 79 + 30794189 ---UAACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ---...........(..(........(((.....)))((((((.....)))))))..)(((((((.((....)).))))))) ( -19.10, z-score = -2.42, R) >droPer1.super_3 2099142 79 + 7375914 ---UAACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC ---...........(..(........(((.....)))((((((.....)))))))..)(((((((.((....)).))))))) ( -19.10, z-score = -2.42, R) >droWil1.scaffold_181130 3316225 81 - 16660200 -UUCAACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC -..((((......(((((..........))))).....(((((.....))))))))).(((((((.((....)).))))))) ( -19.30, z-score = -2.48, R) >droVir3.scaffold_13047 1732948 80 - 19223366 --UUAACAUACCAUGUGAUCCUAAUAGCUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC --...................................((((((.....))))))....(((((((.((....)).))))))) ( -19.00, z-score = -2.28, R) >droMoj3.scaffold_6540 18702001 80 + 34148556 --UUAACAUACCAUGUGAUCCUAAUAGCUUAUAAAACCUAUACUCUAAGUGUAGUUGUGGAGCCUUCGACUUCAUAGGCUCC --...(((.....(((((.(......).)))))....((((((.....)))))).)))(((((((..(....)..))))))) ( -16.90, z-score = -1.52, R) >droGri2.scaffold_14906 12549228 80 - 14172833 --UCAACAUACCAUGUGAUCCUAAUAGCUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUCGGCUCC --.((((......(((((.(......).))))).....(((((.....))))))))).((((((..((....))..)))))) ( -17.60, z-score = -2.01, R) >anoGam1.chr2R 49499128 79 - 62725911 ---GUACUUACCGUGUGCUCCUAGUAAUUUGUAAAACCUAUACUCUAAGUGUAAUUGUGGUGCUUUUGAUUUCAUUGACUCC ---(((((.....((..((...((((..............))))...))..)).....)))))................... ( -9.14, z-score = 0.47, R) >apiMel3.Group2 2953452 79 - 14465785 ---CUACUCACCACUAGCUCCUAAUAAUUUGUAAAACCUAUAUUCUAAGUGUAGCUGCGGCGCCUUCGACCUCAUUGGUUCC ---......((((...((..(((...(((((.((........)).))))).)))..))((((....)).))....))))... ( -9.10, z-score = 0.82, R) >triCas2.chrUn_2 333367 70 - 1160328 ------------AUGACUACCCAAAAACUUGUAAAAUCUAUACUCAAGGUGUAAUUGCGGAGCUUUCGAUUUCAUGGGUUCC ------------..................((((....(((((.....))))).))))(((((((..(....)..))))))) ( -10.20, z-score = 0.44, R) >consensus ___UUACAUACCAUGUGAUCCUAAUAGUUUAUAAAACCUAUACUCUAAGUGUAGUUGCGGAGCCUUUGACUUCAUAGGCUCC .....................................((((((.....))))))....((((((............)))))) (-12.66 = -12.70 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:28 2011