| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,114,539 – 12,114,651 |
| Length | 112 |
| Max. P | 0.729189 |
| Location | 12,114,539 – 12,114,651 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 98.04 |
| Shannon entropy | 0.03217 |
| G+C content | 0.43597 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -29.60 |
| Energy contribution | -29.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12114539 112 - 27905053 -CAGAGAAUUCGAAUCGACUCCAGUCGAGUCGAGUGGAUUGUAGUGGAGUGACUCAUGGCCACCAGACAAGGGAAAUAUGUUUGAUUAAGACAAAAGGUUUUGCUUUGUUGCA -......((((((.(((((....))))).))))))....(((((..(((..(.....((((.((......))......(((((.....)))))...)))))..)))..))))) ( -31.60, z-score = -1.47, R) >droSec1.super_12 90274 113 + 2123299 GCAGAGAAUUCGAAUCGACUCCAGUCGAGUCGAGUGGAUUGUAGUGGAGUGACUCAUGGCCACCAGACAAGGGAAAUAUGUUUGAUUAAGACAAAAGGUUUUGCUUUGUUGCA ((((...((((((.(((((....))))).))))))...)))).((((.(((...)))..))))..((((((((((((.(((((.....)))))....))))).)))))))... ( -31.60, z-score = -1.17, R) >droSim1.chr3R 18166326 112 + 27517382 -CAGAGAAUUCGAAUCGACUCCAGUCGAGUCGAGUGGAUUGUAGUGGAGUGACUCAUGGCCACCAGACAAGGGAAAUAUGUUUGAUUAAGACAAAAGGUUUUGCUUUGUUGCA -......((((((.(((((....))))).))))))....(((((..(((..(.....((((.((......))......(((((.....)))))...)))))..)))..))))) ( -31.60, z-score = -1.47, R) >droYak2.chr3R 14521719 109 + 28832112 -CAGAGAAUUCGAAUCGACUCCAGUCGAGUCGAGUGGAUUGUAGUGGAGUGACUCAUGGCC---AGACAAGGGAAAUAUGUUUGAUUAAGACAAAAGGUUUUGCUUUGUUGCA -......((((((.(((((....))))).))))))....(((((..(((..((((.((...---...)).))).....(((((.....))))).......)..)))..))))) ( -30.60, z-score = -1.57, R) >droEre2.scaffold_4770 11638865 109 - 17746568 -CAGAGAAUUCGAAUCGACUCCAGUCGAGUCGAGUGGAUUGUAGUGGAGUGACUCAUGGCC---AGACAAGGGAAAUAUGUUUGAUUAAGACAAAAGGUUUUGCUUUGUUGCA -......((((((.(((((....))))).))))))....(((((..(((..((((.((...---...)).))).....(((((.....))))).......)..)))..))))) ( -30.60, z-score = -1.57, R) >consensus _CAGAGAAUUCGAAUCGACUCCAGUCGAGUCGAGUGGAUUGUAGUGGAGUGACUCAUGGCCACCAGACAAGGGAAAUAUGUUUGAUUAAGACAAAAGGUUUUGCUUUGUUGCA .......((((((.(((((....))))).))))))....(((((..(((..((((.((.........)).))).....(((((.....))))).......)..)))..))))) (-29.60 = -29.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:26 2011