| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,102,564 – 12,102,736 |
| Length | 172 |
| Max. P | 0.920564 |
| Location | 12,102,564 – 12,102,672 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.07025 |
| G+C content | 0.36964 |
| Mean single sequence MFE | -16.52 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12102564 108 + 27905053 UAACCCAGCUAAACUAACGUAAUUUUGUUGCUAGCCAACAAAACAAACUUACUCACACCCAUCUAGA----UAUUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGU ....((((((((((....))..((((((((.....))))))))........................----....................))))))))............. ( -16.00, z-score = -1.58, R) >droSim1.chr3R 18154160 108 - 27517382 UAACCCAGCUAAACUAACGUAAUUUUGUUGCUAGCCAACAAAACAAACUUACUCACACCCAUCUAGA----UAUUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGU ....((((((((((....))..((((((((.....))))))))........................----....................))))))))............. ( -16.00, z-score = -1.58, R) >droSec1.super_12 78061 108 - 2123299 UAACCCUGCUAGACUAACGUAAUUUUGUUGCUAGCCAACAAAACAAACUUACUCACACCCAUCUAGA----UAUUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGU ........((((((....))..((((((((.....))))))))...................))))(----(((((.(.((((((.((......))))))))..).)))))) ( -18.70, z-score = -2.07, R) >droYak2.chr3R 14504861 108 - 28832112 UAAGCCAGCUAAACUAACGUAAUUUUGUUGCUAGCCAACAAAACAAACUUACUCACACCCAUCUCCA----UAUUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGU ....((((((((((....))..((((((((.....))))))))........................----....................))))))))............. ( -15.90, z-score = -1.45, R) >droEre2.scaffold_4770 11626972 112 + 17746568 UAACCCAGCUAAACUAACGUAAUUUUGUUGCUAGCCAACAAAACAAACUUACUCACACCCAUCUAUACAUAUAUUCAUAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGU ....((((((((((....))..((((((((.....))))))))................................................))))))))............. ( -16.00, z-score = -1.74, R) >consensus UAACCCAGCUAAACUAACGUAAUUUUGUUGCUAGCCAACAAAACAAACUUACUCACACCCAUCUAGA____UAUUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGU ..................((((((((((((.....)))))))).....))))..................................((((((..((((....)))))))))) (-15.10 = -15.10 + -0.00)
| Location | 12,102,633 – 12,102,736 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 97.09 |
| Shannon entropy | 0.04213 |
| G+C content | 0.28803 |
| Mean single sequence MFE | -18.57 |
| Consensus MFE | -17.26 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12102633 103 + 27905053 UUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGUAAUAAAAAACAAACUUUUUGUAUUACUUUUUAUUAUUUAAUAGCCGAGCUAUUAUGACAAGUGA .((((........((((((..((((....))))))))))((((((((((((.....)))).....))))))))...(((((((...)))))))......)))) ( -20.00, z-score = -2.70, R) >droSim1.chr3R 18154229 103 - 27517382 UUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGUAAUAAAAAACAAACUUUUUGUAUUACUUUUUAUUAUUUAAUAGCCGAGCUUUUAUGACAAGUGA .((((........((((((..((((....))))))))))((((((((((((.....)))).....))))))))...(((.(((...))).)))......)))) ( -16.10, z-score = -1.19, R) >droYak2.chr3R 14504930 103 - 28832112 UUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGUAACAAAAAACAAACUUUUUGUUUUACUUUUUAUUAUUUAAUAGCCGAGCUGUUAUGACAAGAGA .............((((((..((((....))))))))))((((((((......))))))))...(((((.......(((((((...)))))))....))))). ( -19.60, z-score = -2.27, R) >consensus UUCACAUUUCCACACAUUUUAGUUGGAGACAGCGAAUGUAAUAAAAAACAAACUUUUUGUAUUACUUUUUAUUAUUUAAUAGCCGAGCUAUUAUGACAAGUGA .((((........((((((..((((....)))))))))).(((((((......)))))))................(((((((...)))))))......)))) (-17.26 = -17.60 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:25 2011